Transcript 18119 | MetamORF

Transcript

ID CARD

MetamORF ID

18119

ENSMUST00000027173

Name

Wdr12-201

Strand

Biotype

protein_coding

Start-end positions

60069785-60097908

CDS Start-stop positions

60078164-60097547

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:57750

Aliases

4933402C23Rik,
ENSMUSG00000026019, MGI:1927241, NCBI:57750,
OFF:Wdr12, Wdr12, Ytm1,
Ytm1p

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
18118	60	GTG ...	VEI ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	MEF, Testis
691088	54	CTG ...	LVL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
640485	36	CTG ...	LGD ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1782748	39	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	MEF
1619413	42	TTG ...	LTN ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1645443	102	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1645203	81	TTG ...	LKG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1767902	30	CTG ...	LDA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	MEF
469776	51	GTG ...	VCG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1645873	42	GTG ...	VWT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1623813	48	CTG ...	LGV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
728854	48	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
729809	45	ATG ...	MIR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
660520	30	ATG ...	MNS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
711924	57	GTG ...	VRA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
544788	99	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
335343	39	ATG ...	MFC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF Upstream	E14, MEF, NSC
91460	63	CTG ...	LVE ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF Upstream	MEF, Testis
24824	81	ATG ...	MCA ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, Testis
687142	45	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
58620	84	TTG ...	LMC ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, Testis
477866	42	CTG ...	LGA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1638110	60	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
21015	111	ATG ...	MFP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, Testis
488137	51	ATG ...	MLG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell

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