Transcript 379401

Transcript

ID CARD

MetamORF ID

379401

ENSMUST00000174588

Name

Vps52-206

Strand

Biotype

retained_intron

Start-end positions

33962389-33966269

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:224705

Aliases

ARE1,
D130068D18, D430041K17Rik, ENSMUSG00000024319,
MGI:1330304, NCBI:224705, OFF:Vps52,
SAC2, Sacm2l, tclw5,
Vps52

Chr 17

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
480076	33	GTG ...	VEL ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Neutrophil, R1E, Spleen_B_cell
379444	69	GTG ...	VKE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Neutrophil, R1E
1863712	141	CTG ...	LTQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1048051	132	CTG ...	LIQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
479758	60	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
385802	96	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil
380175	42	GTG ...	VAL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, v6-5
480301	63	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
1627816	99	TTG ...	LAC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
380223	81	CTG ...	LVA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Neutrophil, R1E
387386	72	TTG ...	LSA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
385955	90	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
386128	102	CTG ...	LSP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
380936	78	CTG ...	LHL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
379487	141	CTG ...	LIR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
382012	93	ATG ...	MLS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
384176	105	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
385977	78	GTG ...	VAF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Neutrophil, R1E
386399	105	GTG ...	VES ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
482778	57	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
379400	36	TTG ...	LVV ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, v6-5
382070	51	TTG ...	LIE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Neutrophil, R1E
386301	30	CTG ...	LQL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E

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