Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

10778

ID

ENSMUST00000022369

Name

Vcl-201

Strand

+

Biotype

protein_coding

Start-end positions

20929398-21033676

CDS Start-stop positions

20929521-21031733

CDS Relative positions

-

Sequences

Transcript sequence

AGT ...

Gene

ID

NCBI:22330

Aliases

9430097D22,
AA571387, AI462105, AW545629,
ENSMUSG00000021823, MGI:98927, NCBI:22330,
OFF:Vcl, Vcl


Chr 14

ORFs

135 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

676157 84

CTG ...

LRV ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
1492290 114

CTG ...

LLQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
NSC
679295 126

TTG ...

LTA ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
676105 30

CTG ...

LES ...

Ribo-seq
CTG strong 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, R1E,
v6-5
946801 63

AGG ...

RSL ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
1306510 99

ATC ...

IGS ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1309701 66

AAG ...

KPS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
676065 63

GTG ...

VVP ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1450403 36

GTG ...

VPR ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, NSC
1310459 75

ACG ...

TRS ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
676115 30

GTG ...

VQA ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
978597 30

GTG ...

VCQ ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
680162 99

TTG ...

LQR ...

Ribo-seq
TTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil, NSC, R1E,
v6-5
1309155 87

AGG ...

RNF ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
680316 93

CTG ...

LTY ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
675085 72

CTG ...

LKL ...

Ribo-seq
CTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
MEF, Neutrophil, R1E
947153 54

ATA ...

ISG ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
677650 42

CTG ...

LKK ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
680730 69

ATG ...

MKL ...

Ribo-seq
ATG 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, NSC
675364 51

CTG ...

LLV ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
676069 36

CTG ...

LLL ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF
675948 57

ATG ...

MKL ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, Neutrophil
1307144 63

ACG ...

TRS ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
681184 126

CTG ...

LTS ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, NSC
1310003 54

AGG ...

RLP ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
678316 48

ATG ...

MLL ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC
676931 36

TTG ...

LLQ ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E
678348 45

CTG ...

LTS ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF
1710805 30

CTG ...

LRG ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
678164 51

GTG ...

VMI ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil
676739 54

CTG ...

LLL ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
679875 45

CTG ...

LTS ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF
678528 63

TTG ...

LCR ...

Ribo-seq
TTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
NSC, R1E, v6-5
1310032 48

AGG ...

RAR ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
681100 210

TTG ...

LKM ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
10890 42

TTG ...

LEK ...

Ribo-seq
TTG strong 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Skin_tumor
677772 117

GTG ...

VDL ...

Ribo-seq
GTG strong 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil,
v6-5
1307831 108

AGG ...

REK ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1309851 156

AGG ...

RLE ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
675466 147

ATG ...

MLA ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil, v6-5
677671 48

ATG ...

MIL ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
1612995 36

TTG ...

LWL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
676188 111

CTG ...

LRE ...

Ribo-seq
CTG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil,
v6-5
677207 39

GTG ...

VNF ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
675731 36

CTG ...

LTY ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1140398 132

CTG ...

LCE ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
v6-5
678231 63

CTG ...

LEQ ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
679329 84

CTG ...

LKL ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
676518 60

CTG ...

LST ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
676363 153

CTG ...

LLP ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, MEF,
v6-5
1308047 66

ATA ...

IPS ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1491650 90

ATG ...

MLA ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC
946607 168

ACG ...

TDP ...

Ribo-seq
ACG moderate 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, E14
1308214 48

TTG ...

LLV ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
1308160 51

AGG ...

RHS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1178712 36

ATC ...

ISY ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
675093 75

CTG ...

LTW ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
678103 42

CTG ...

LPI ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
1306633 87

ATA ...

IFS ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1139840 51

CTG ...

LPS ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
680500 189

TTG ...

LFR ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
675856 39

TTG ...

LNR ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
679169 114

ATG ...

MSW ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC
675444 63

TTG ...

LQN ...

Ribo-seq
TTG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, Neutrophil
680783 138

CTG ...

LTK ...

Ribo-seq
CTG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, NSC, v6-5
677905 78

CTG ...

LKL ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil
678297 30

TTG ...

LQR ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil,
NSC
679978 144

CTG ...

LRG ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
10979 93

TTG ...

LQR ...

Ribo-seq
TTG 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, v6-5
10925 51

GTG ...

VCY ...

Ribo-seq
GTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, Neutrophil, Skin_tumor
676252 51

CTG ...

LEK ...

Ribo-seq
CTG strong 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil,
NSC
678769 117

ATG ...

MKG ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
945928 90

ATT ...

IQE ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
678667 78

GTG ...

VKS ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
679738 69

GTG ...

VMR ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1309931 36

ATC ...

IAK ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
676783 72

CTG ...

LPK ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1307398 45

ATC ...

ILR ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
676820 132

TTG ...

LFR ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil, v6-5
678274 87

CTG ...

LRG ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
676009 39

CTG ...

LVT ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
1308676 63

ATC ...

IDS ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
676476 75

GTG ...

VLK ...

Ribo-seq
GTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
MEF, Neutrophil, R1E
1306954 45

AAG ...

KRR ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
677477 150

TTG ...

LPA ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, MEF, v6-5
678658 69

TTG ...

LTA ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1308778 30

ATA ...

IMP ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
676683 78

TTG ...

LHQ ...

Ribo-seq
TTG weak 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
NSC, R1E, v6-5
10777 30

TTG ...

LAG ...

Ribo-seq
TTG strong 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Skin_tumor,
v6-5
676436 48

TTG ...

LVL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
681060 66

ATG ...

MRS ...

Ribo-seq
ATG 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
v6-5
675281 45

CTG ...

LAH ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
675105 66

CTG ...

LPE ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
679639 156

CTG ...

LLL ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
678319 42

TTG ...

LVN ...

Ribo-seq
TTG strong 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
R1E
677868 117

CTG ...

LMS ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
676511 153

TTG ...

LKM ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil, v6-5
679914 63

GTG ...

VCY ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil
1492089 120

CTG ...

LKL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
NSC
945972 123

AGG ...

RLK ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
676145 99

TTG ...

LKT ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
420878 33

ACG ...

TMK ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
675994 78

TTG ...

LEP ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
679551 72

TTG ...

LPS ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1138941 33

ATG ...

MLE ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, R1E, v6-5
1307010 57

AGG ...

RQG ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
676003 120

ATG ...

MVD ...

Ribo-seq
ATG moderate 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil, v6-5
679988 165

TTG ...

LQR ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil,
v6-5
677520 69

TTG ...

LIP ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
680233 84

CTG ...

LWP ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF
1308079 105

AAG ...

KEL ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1306430 39

ATC ...

ICE ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
678755 30

ATG ...

MTS ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
1308288 75

ATA ...

ISY ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1310302 81

ATA ...

ISY ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
681057 102

CTG ...

LAH ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1614418 42

GTG ...

VDL ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1310347 93

AGG ...

RNF ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
674565 84

CTG ...

LWP ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF
10942 30

CTG ...

LFR ...

Ribo-seq
CTG moderate 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Skin_tumor,
v6-5
1308101 66

AAG ...

KQL ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
675764 45

ATG ...

MFS ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC
679049 30

ATG ...

MKL ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, NSC
678944 120

TTG ...

LMK ...

Ribo-seq
TTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF
11023 30

CTG ...

LRT ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor
1307107 66

AAG ...

KRG ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1307654 60

AGG ...

RGS ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
681132 57

CTG ...

LSR ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1308539 75

AGG ...

RLL ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
947326 51

AGG ...

RPQ ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
678913 87

ATG ...

MRA ...

Ribo-seq
ATG moderate 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
v6-5
680781 204

ATG ...

MLA ...

Ribo-seq
ATG 9 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
v6-5
947078 99

AGG ...

RPL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
676216 36

ATG ...

MKS ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
681137 87

GTG ...

VLK ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5