Transcript 88423 | MetamORF

Transcript

ID CARD

MetamORF ID

88423

ENSMUST00000169594

Name

Usp9x-206

Strand

Biotype

protein_coding

Start-end positions

13071498-13123449

CDS Start-stop positions

13094082-

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:22284

Aliases

5730589N07Rik,
AA407302, AA407699, AL022658,
AL022749, Dffrx, ENSMUSG00000031010,
FAF-X, Fafl, MGI:894681,
NCBI:22284, OFF:Usp9x, Usp9x

Chr X

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89554	114	ATG ...	MVS ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	sORF	BMDC, MEF, Spleen_B_cell, Testis
88942	51	ATG ...	MAV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, MEF, Testis
284138	93	ATG ...	MQW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	BMDC, MEF
90017	159	GTG ...	VAR ...	Ribo-seq	GTG		13	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
280002	42	CTG ...	LTN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	BMDC
767709	183	TTG ...	LHL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF, Neutrophil
285990	99	TTG ...	LVM ...	Ribo-seq	TTG		10	sORFs_org_Mouse	sORF	BMDC, Brain, Liver, MEF, Neutrophil
88947	63	CTG ...	LWY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Spleen_B_cell, Testis
286615	48	ATG ...	MFK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
443758	255	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
283943	39	ATG ...	MDS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
280598	84	TTG ...	LEP ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF
279592	63	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
286513	210	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
282187	81	CTG ...	LQD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	BMDC, MEF
89862	96	TTG ...	LTR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	B_cell, MEF, Spleen_B_cell, Testis
276124	63	TTG ...	LNW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	BMDC, MEF
89796	72	CTG ...	LRK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell, Testis
277991	60	CTG ...	LIS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
279037	84	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
442292	48	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
284677	75	ATG ...	MIY ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, MEF
284644	42	CTG ...	LMD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
285981	189	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
89665	87	CTG ...	LWY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	B_cell, MEF, Spleen_B_cell, Testis
284148	60	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
285532	51	ATG ...	MNS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
279185	72	TTG ...	LEG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
286877	105	TTG ...	LCL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	sORF	BMDC, Brain, Liver, MEF, Neutrophil, R1E
88422	72	TTG ...	LTR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Spleen_B_cell, Testis
275295	81	ATG ...	MYM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, MEF
88922	75	GTG ...	VCH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Testis
287301	129	GTG ...	VFG ...	Ribo-seq	GTG		14	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
281515	84	CTG ...	LMS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3

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