Transcript 418001

Transcript

ID CARD

MetamORF ID

418001

ENSMUST00000133997

Name

Usp9x-203

Strand

Biotype

protein_coding

Start-end positions

13160857-13169898

CDS Start-stop positions

-13169484

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:22284

Aliases

5730589N07Rik,
AA407302, AA407699, AL022658,
AL022749, Dffrx, ENSMUSG00000031010,
FAF-X, Fafl, MGI:894681,
NCBI:22284, OFF:Usp9x, Usp9x

Chr X

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
443890	42	TTG ...	LQC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Brain, Spleen_B_cell, v6-5
444472	45	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, Spleen_B_cell, v6-5
285911	147	ATG ...	MRP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, v6-5
276420	63	TTG ...	LHI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
633208	30	GTG ...	VYK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Brain
1119440	54	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, v6-5
284848	150	CTG ...	LMR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, v6-5
286719	90	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, v6-5
1119664	108	ATG ...	MRP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, v6-5
283116	66	ATG ...	MGC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	C2C12
285520	129	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	B_cell
279922	96	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	B_cell
276236	33	ATG ...	MDL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
442208	45	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, Spleen_B_cell, v6-5
926908	39	CTG ...	LGE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
1119318	30	TTG ...	LVI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain, v6-5
1119205	129	TTG ...	LKT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, v6-5
1116718	45	TTG ...	LLL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	Brain, v6-5
277928	45	ATG ...	MNS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
285254	81	GTG ...	VNF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
286219	168	TTG ...	LKT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, v6-5
284125	75	ATG ...	MTE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	B_cell
442595	42	TTG ...	LQC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Brain, Spleen_B_cell, v6-5
1117316	111	CTG ...	LMR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, v6-5

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