Transcript 88242 | MetamORF

Transcript

ID CARD

MetamORF ID

88242

ENSMUST00000124097

Name

Usp9x-202

Strand

Biotype

retained_intron

Start-end positions

13129327-13133782

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:22284

Aliases

5730589N07Rik,
AA407302, AA407699, AL022658,
AL022749, Dffrx, ENSMUSG00000031010,
FAF-X, Fafl, MGI:894681,
NCBI:22284, OFF:Usp9x, Usp9x

Chr X

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
443401	51	TTG ...	LAM ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
1034560	147	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
631948	33	ATG ...	MIP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
632485	84	ATG ...	MPN ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
1277405	189	AAG ...	KLR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1278073	63	ATA ...	IHL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
927802	30	AGG ...	REQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
632030	75	TTG ...	LEK ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
628997	39	TTG ...	LFG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
926680	48	AAG ...	KSY ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1277282	195	ATA ...	IEK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
88241	300	TTG ...	LTD ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
633505	51	ATG ...	MQI ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
1278291	78	AGG ...	RCR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
89623	264	TTG ...	LKS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
628743	48	TTG ...	LAS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
629621	33	GTG ...	VLW ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
441557	45	ATG ...	MAM ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Spleen_B_cell
1573157	99	GTG ...	VSY ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
630199	36	CTG ...	LMI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
632360	48	TTG ...	LTH ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
1034311	237	CTG ...	LSM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
1277065	156	ATA ...	IAK ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1278108	177	ATT ...	ICL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1277485	87	TTG ...	LST ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1278873	201	ACG ...	TTI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1277920	66	ATA ...	ITS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
927413	39	ATA ...	ICH ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
926175	42	ATC ...	IPD ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
89058	249	CTG ...	LPL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Testis
442109	57	CTG ...	LPL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Spleen_B_cell
630096	30	CTG ...	LWQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
629370	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
89621	171	TTG ...	LDH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
441916	39	ATG ...	MFV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Spleen_B_cell
1279045	33	AAG ...	KSA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14

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