Transcript 371652

Transcript

ID CARD

MetamORF ID

371652

ENSMUST00000162445

Name

Usp7-210

Strand

Biotype

processed_transcript

Start-end positions

8690780-8721656

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:252870

Aliases

2210010O09Rik,
AA409944, AA617399, AU019296,
AW548146, C80752, ENSMUSG00000022710,
Hausp, MGI:2182061, NCBI:252870,
OFF:Usp7, Usp7

Chr 16

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34835	84	TTG ...	LPP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
372907	114	GTG ...	VRN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Spleen_B_cell
375900	87	GTG ...	VMP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
34017	99	GTG ...	VKF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
33659	75	GTG ...	VLH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
368651	132	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
368312	72	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
33922	66	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
373638	48	ATG ...	MTH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
374200	90	GTG ...	VTD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
373345	105	GTG ...	VFC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
369653	105	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
372559	129	CTG ...	LSD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
475107	66	TTG ...	LQT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
693650	84	ATG ...	MED ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
370938	147	CTG ...	LSE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
377340	51	CTG ...	LSD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
794991	144	ATG ...	MAG ...	Predicted Ribo-seq	ATG		3	sORFs_org_Mouse Mackowiak2015	ncRNA sORF	B_cell, MEF
371771	60	CTG ...	LEI ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
474617	78	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
952674	84	ATC ...	ITD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
372265	30	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
371651	129	CTG ...	LKI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
952153	120	ATA ...	INY ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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