Transcript 236846

Transcript

ID CARD

MetamORF ID

236846

ENSMUST00000211538

Name

Usp38-202

Strand

Biotype

processed_transcript

Start-end positions

80998213-81014913

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:74841

Aliases

4631402N15Rik,
4833420O05Rik, AA536967, AU044701,
AW544820, ENSMUSG00000038250, MGI:1922091,
mKIAA1891, NCBI:74841, OFF:Usp38,
Usp38

Chr 8

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1826949	141	TTG ...	LID ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
248454	135	CTG ...	LSW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
249619	174	CTG ...	LPA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
252710	225	CTG ...	LSW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1824358	51	TTG ...	LID ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
246891	234	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
251048	177	CTG ...	LKG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1265054	207	ACG ...	TKA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1580033	93	GTG ...	VGN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
247310	150	CTG ...	LAL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
236845	231	CTG ...	LVG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
250665	168	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1262939	219	ATC ...	IAR ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
248189	264	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
431710	249	CTG ...	LPT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1581664	129	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
238679	237	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
252092	213	TTG ...	LAQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
247052	273	ATG ...	MWL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
240259	144	TTG ...	LQS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
246878	267	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
427449	177	CTG ...	LEG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
243039	87	CTG ...	LKG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
431619	219	CTG ...	LTR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
239582	36	TTG ...	LAR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
243852	180	CTG ...	LPL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
1826971	126	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1827330	123	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
244465	123	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1827830	81	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E

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