Transcript 54460 | MetamORF

Transcript

ID CARD

MetamORF ID

54460

ENSMUST00000189257

Name

Usp37-205

Strand

Biotype

protein_coding

Start-end positions

74437730-74544284

CDS Start-stop positions

74439391-74495785

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:319651

Aliases

4932415L06Rik,
C330008N13Rik, ENSMUSG00000033364, MGI:2442483,
NCBI:319651, OFF:Usp37, Usp37

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
815812	141	ATG ...	MVL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1087335	33	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
392238	45	ATG ...	MTA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
1616322	48	GTG ...	VIC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
734132	96	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1644973	90	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1149114	30	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1707911	45	ATG ...	MFL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1707923	39	TTG ...	LIW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1640760	108	TTG ...	LIQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1127785	66	ATG ...	MGA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1637842	75	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1625024	33	ATG ...	MNS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
809008	51	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1641954	51	GTG ...	VIC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1209820	96	GTG ...	VRM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1281976	93	GTG ...	VRM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1184512	51	ATG ...	MRM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1637528	36	ATG ...	MNS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
349041	57	CTG ...	LEM ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
54459	246	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	Testis
737301	105	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
155806	66	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1171787	111	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
349528	48	TTG ...	LMT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell

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