Transcript 639963

Transcript

ID CARD

MetamORF ID

639963

ENSMUST00000173525

Name

Usp22-202

Strand

Biotype

retained_intron

Start-end positions

61154019-61157392

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:216825

Aliases

AI427806,
ENSMUSG00000042506, MGI:2144157, NCBI:216825,
OFF:Usp22, Usp22

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1289444	183	AAG ...	KGP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1287458	231	TTG ...	LES ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
310983	69	CTG ...	LFL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
19044	51	GTG ...	VSF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, NSC, v6-5
1529235	75	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
994145	198	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
300229	33	CTG ...	LDM ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, NSC, v6-5
1284695	66	AAG ...	KIT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
20177	39	CTG ...	LEL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, v6-5
1292823	111	ACG ...	TPL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
453937	30	ATG ...	MCL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
1289460	33	ATA ...	IPA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1287543	129	ATA ...	ICV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1291421	204	ATC ...	IRQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1291120	135	AAG ...	KTS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
297380	63	TTG ...	LQQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
450269	69	TTG ...	LNT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC, v6-5
1292929	261	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1284092	168	GTG ...	VAT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, NSC

Export data