Transcript 39841 | MetamORF

Transcript

ID CARD

MetamORF ID

39841

ENSMUST00000128334

Name

Usp14-203

Strand

Biotype

retained_intron

Start-end positions

10009353-10030081

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:59025

Aliases

2610005K12Rik,
2610037B11Rik, AW107924, ax,
C78769, ENSMUSG00000047879, MGI:1928898,
NCBI:59025, nmf375, OFF:Usp14,
Usp14

Chr 18

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
40673	33	GTG ...	VPE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell, Testis
393808	132	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
40163	120	TTG ...	LNT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1543229	183	TTG ...	LFD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
713411	42	ATG ...	MNL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
398261	42	TTG ...	LQR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
486109	45	TTG ...	LLH ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
714927	42	ATG ...	MLF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
392472	30	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
714265	45	CTG ...	LMN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
396564	90	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
486088	90	TTG ...	LTN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
397091	153	ATG ...	MRL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
486177	102	TTG ...	LPC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
39840	63	TTG ...	LRA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
393939	120	TTG ...	LIP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
393436	72	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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