Transcript 154112

Transcript

ID CARD

MetamORF ID

154112

ENSMUST00000030289

Name

Usp1-201

Strand

Biotype

protein_coding

Start-end positions

98923810-98935543

CDS Start-stop positions

98926505-98934805

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:230484

Aliases

ENSMUSG00000028560,
MGI:2385198, NCBI:230484, OFF:Usp1,
Usp1

Chr 4

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
154111	45	CTG ...	LRE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
510323	204	GTG ...	VER ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
1379009	48	ATG ...	MGF ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
59412	36	CTG ...	LAR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF Upstream	E14, Neutrophil, R1E
1782279	30	TTG ...	LKE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
512608	33	GTG ...	VEL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
551003	72	ATG ...	MIL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
557949	75	CTG ...	LPG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Neutrophil, R1E
1653009	60	ATG ...	MGP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
546675	45	CTG ...	LTG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
515417	60	CTG ...	LNI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E, Spleen_B_cell
156773	30	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1731579	39	ATG ...	MRG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1376580	72	CTG ...	LAS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
516097	45	CTG ...	LRL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
1654525	81	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1377328	57	GTG ...	VKV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1656819	123	CTG ...	LIR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1231620	180	AGG ...	RRV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
163117	90	CTG ...	LIL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
1060283	156	ATG ...	MVT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil, R1E
162729	75	ATG ...	MKK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell
1654180	111	TTG ...	LGH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
511042	93	CTG ...	LQR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil, Spleen_B_cell

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