Transcript 211148

Transcript

ID CARD

MetamORF ID

211148

ENSMUST00000123704

Name

Uqcrc2-202

Strand

Biotype

processed_transcript

Start-end positions

120635515-120651203

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:67003

Aliases

1500004O06Rik,
ENSMUSG00000030884, MGI:1914253, NCBI:67003,
OFF:Uqcrc2, Uqcrc2

Chr 7

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4303	60	ATG ...	MRT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
227184	138	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
228505	168	GTG ...	VIA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
75502	108	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver
1564925	147	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
877557	96	CTG ...	LYL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
224770	156	CTG ...	LLN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
218527	81	TTG ...	LAN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell
913877	30	ATT ...	IYY ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
4429	60	GTG ...	VTA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
219142	108	TTG ...	LHD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell
226397	156	CTG ...	LEN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
221951	171	TTG ...	LVI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
222242	123	TTG ...	LFV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
216038	69	TTG ...	LYC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell
211147	66	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
914998	57	AGG ...	RTP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
4457	102	TTG ...	LFI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
72395	126	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
4141	105	CTG ...	LLF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell

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