Transcript 72396 | MetamORF

Transcript

ID CARD

MetamORF ID

72396

ENSMUST00000033176

Name

Uqcrc2-201

Strand

Biotype

protein_coding

Start-end positions

120635176-120659524

CDS Start-stop positions

120635290-120659104

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:67003

Aliases

1500004O06Rik,
ENSMUSG00000030884, MGI:1914253, NCBI:67003,
OFF:Uqcrc2, Uqcrc2

Chr 7

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
231943	129	TTG ...	LEF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, NSC, Spleen_B_cell
231355	105	ATG ...	MLL ...	Ribo-seq	ATG		17	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
753386	33	GTG ...	VQM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, NSC
72735	33	TTG ...	LPK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E, Spleen_B_cell, Testis
235188	123	TTG ...	LLL ...	Ribo-seq	TTG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
75502	108	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell, Testis
211147	66	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
426337	81	ATG ...	MLP ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, NSC, Spleen_B_cell
233738	138	CTG ...	LGS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, NSC, Spleen_B_cell, v6-5
4303	60	ATG ...	MRT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell
425433	54	TTG ...	LLK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, NSC, Spleen_B_cell
232394	165	CTG ...	LHL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, NSC, R1E, Spleen_B_cell, v6-5
916368	54	AGG ...	RTP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
221287	144	ATG ...	MET ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
227566	102	CTG ...	LPL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, Spleen_B_cell
916958	48	AAG ...	KET ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
591567	30	TTG ...	LTP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
3831	69	ATG ...	MML ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
218106	114	TTG ...	LQK ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, NSC, Spleen_B_cell
233982	156	ATG ...	MPV ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, NSC, R1E, Spleen_B_cell, v6-5
232993	57	ATG ...	MRT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E
4628	63	TTG ...	LPT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
219801	162	GTG ...	VKL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, Spleen_B_cell
589235	78	ATG ...	MHS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
879348	72	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
532758	96	TTG ...	LEM ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, Spleen_B_cell
598052	69	GTG ...	VYF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
422617	72	CTG ...	LQV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell
913313	84	AGG ...	RQM ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
213746	117	TTG ...	LLQ ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, NSC, Spleen_B_cell
4558	51	ATG ...	MPW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
422806	42	TTG ...	LLS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
76606	81	CTG ...	LHL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
597722	90	ATG ...	MQR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
4425	66	ATG ...	MLP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
216579	123	CTG ...	LLL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, Spleen_B_cell
1251563	42	ATA ...	ISN ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
213196	105	GTG ...	VLP ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, Spleen_B_cell
424663	63	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Spleen_B_cell
916590	66	AAG ...	KSK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
425490	78	CTG ...	LPT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, NSC, Spleen_B_cell
225602	126	ATG ...	MLL ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, Spleen_B_cell
72395	126	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell, Testis
218260	45	CTG ...	LDH ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
72643	54	CTG ...	LGS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
72504	36	GTG ...	VLP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell, Testis
75787	45	TTG ...	LEF ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
1252809	42	AGG ...	RFL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
588821	48	GTG ...	VLD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
4383	81	TTG ...	LRT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
230611	198	TTG ...	LPK ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
235112	201	GTG ...	VLP ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
534565	39	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
75331	72	ATG ...	MPV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
425696	93	TTG ...	LPR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Spleen_B_cell
916387	60	AAG ...	KQL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14

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