Transcript 478628

Transcript

ID CARD

MetamORF ID

478628

ENSMUST00000001258

Name

Uhrf1-201

Strand

Biotype

protein_coding

Start-end positions

56303321-56323486

CDS Start-stop positions

56305098-56322502

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:18140

Aliases

AL022808,
ENSMUSG00000001228, ICBP90, MGI:1338889,
NCBI:18140, Np95, OFF:Uhrf1,
RNF106, Uhrf1

Chr 17

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38750	81	ATG ...	MSS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
38875	69	ATG ...	MTI ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
483776	270	ATG ...	MTR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
478627	45	ATG ...	MGE ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
483760	294	ATG ...	MVK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
479786	240	ATG ...	MAT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
954966	39	AGG ...	RFE ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1192276	117	CTG ...	LAM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
482765	72	ATG ...	MVK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
1048589	54	CTG ...	LSF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
480376	87	CTG ...	LEG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, Spleen_B_cell
482446	63	TTG ...	LRK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
37768	54	ATG ...	MEW ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
479975	57	CTG ...	LKR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
478868	30	TTG ...	LSS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, Spleen_B_cell, v6-5
483988	180	TTG ...	LRP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1047429	63	TTG ...	LGL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
480718	69	GTG ...	VKG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
483440	117	GTG ...	VPL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
37032	42	TTG ...	LSK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
1358193	114	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1150874	57	CTG ...	LSG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
483790	96	ATG ...	MTS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
484098	204	GTG ...	VTI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Spleen_B_cell, v6-5
38757	72	ATG ...	MMT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
1149859	75	ATG ...	MLR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1048476	48	GTG ...	VPT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil
481603	48	ATG ...	MTR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
483475	291	GTG ...	VKG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
480783	219	ATG ...	MMC ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
710019	30	GTG ...	VSY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1625625	111	ATG ...	MVW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
484020	141	CTG ...	LRT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
711343	66	TTG ...	LRS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1627349	123	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
955037	177	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
479504	39	GTG ...	VCL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1626564	63	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1149845	204	ATG ...	MTQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1151576	36	GTG ...	VSY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1153059	78	ATG ...	MML ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1149784	39	CTG ...	LCG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
482189	216	ATG ...	MCA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
483108	72	ATG ...	MML ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
483063	279	CTG ...	LKR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1626169	108	GTG ...	VWV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
483778	261	CTG ...	LCG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
482900	216	ATG ...	MWT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1152824	72	TTG ...	LRS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
484177	222	ATG ...	MSM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
483598	69	ATG ...	MLR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
484401	189	GTG ...	VHG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
1048118	90	GTG ...	VPA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
481282	66	GTG ...	VLT ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, Spleen_B_cell
482017	96	GTG ...	VDP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
1626877	96	GTG ...	VNQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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