Transcript 18314 | MetamORF

Transcript

ID CARD

MetamORF ID

18314

ENSMUST00000133343

Name

Ugp2-203

Strand

Biotype

processed_transcript

Start-end positions

21321924-21329892

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:216558

Aliases

ENSMUSG00000001891,
MGI:2183447, NCBI:216558, OFF:Ugp2,
UDPGP, Ugp2, UGPase

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
888586	177	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
648860	273	CTG ...	LNV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E
18313	72	CTG ...	LEL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Neutrophil, Testis
319307	249	GTG ...	VPK ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E
1037509	234	CTG ...	LRL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
643807	30	ATG ...	MFQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
294532	57	TTG ...	LKV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
303417	48	TTG ...	LQI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
888345	51	GTG ...	VLE ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, R1E
655010	273	CTG ...	LRL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
320283	117	GTG ...	VNP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, v6-5
937377	177	ATT ...	ISL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1078568	225	GTG ...	VEI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
648318	285	TTG ...	LDG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E
1079328	210	GTG ...	VPK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
890582	183	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
655216	267	CTG ...	LVE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E
314573	216	GTG ...	VSK ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
1078783	228	CTG ...	LVE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
889333	39	ATG ...	MVT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	Liver
312578	264	GTG ...	VEI ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E
642568	42	GTG ...	VKS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
20463	66	CTG ...	LDH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis

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