Transcript 458168

Transcript

ID CARD

MetamORF ID

458168

ENSMUST00000174224

Name

Uggt1-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

36161747-36173473

CDS Start-stop positions

36164517-

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:320011

Aliases

0910001L17Rik,
A930007H10Rik, AA589501, AI414429,
AI448372, C820010P03Rik, ENSMUSG00000037470,
GT, MGI:2443162, NCBI:320011,
OFF:Uggt1, Ugcgl1, Uggt1,
UGT1

Chr 1

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
325867	87	CTG ...	LNT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil
1289526	66	ATC ...	IEY ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
645042	54	TTG ...	LLT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
1203886	69	AGG ...	RIE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
91477	168	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
694862	51	TTG ...	LTL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	3T3, E14
36893	177	CTG ...	LEY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	3T3, Neutrophil, v6-5
951538	132	ATT ...	IKL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
316254	96	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
67201	81	TTG ...	LTQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF
383971	102	CTG ...	LFT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil
1285552	174	ATT ...	ISF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
310916	120	TTG ...	LVM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Neutrophil, Spleen_B_cell
174551	93	TTG ...	LNL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil
1306512	198	ATA ...	IVA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	E14
707179	126	CTG ...	LKP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	3T3, E14, Neutrophil
1124868	36	CTG ...	LDN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF, NSC
386111	108	GTG ...	VDA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
83633	123	CTG ...	LDM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil
955163	135	ATA ...	IAK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	E14
19349	195	GTG ...	VAA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	3T3, Neutrophil, v6-5
1203230	132	ATA ...	ISV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	E14
1290373	93	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
91893	72	CTG ...	LIN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF
688498	111	TTG ...	LLR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, v6-5
20050	207	GTG ...	VDS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	3T3, MEF, Neutrophil, v6-5
1601312	48	ATG ...	MCF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF

Export data