Transcript 93923 | MetamORF

Transcript

ID CARD

MetamORF ID

93923

ENSMUST00000190736

Name

Ubxn4-204

Strand

Biotype

protein_coding

Start-end positions

128243964-128259535

CDS Start-stop positions

128258832-

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:67812

Aliases

1300013G12Rik,
ENSMUSG00000026353, MGI:1915062, mKIAA0242,
NCBI:67812, OFF:Ubxn4, Ubxd2,
Ubxn4

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19575	51	ATG ...	MMS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	MEF, v6-5
26110	48	ATG ...	MSN ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Brain, MEF
359210	93	CTG ...	LMY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
102847	144	ATG ...	MTT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
376316	99	TTG ...	LNL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
897532	138	ATA ...	IQM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
463397	48	ATG ...	MDV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	3T3, B_cell, Liver
378571	84	GTG ...	VKI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, Brain, Liver
93922	39	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, Brain, E14
1015032	183	CTG ...	LQA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF	Brain, E14, Liver, MEF, Neutrophil, v6-5
1185149	270	TTG ...	LEV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
52632	72	CTG ...	LQM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
490006	78	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
474712	33	CTG ...	LTQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Liver
313361	51	GTG ...	VRH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver
327987	45	CTG ...	LQM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
308102	72	ATG ...	MTA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver
329469	51	GTG ...	VFL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Brain
505163	66	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
738593	105	GTG ...	VTQ ...	Ribo-seq	GTG		9	sORFs_org_Mouse	sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
284575	90	ATG ...	MYV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, Brain, Liver
397135	33	TTG ...	LLQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
255191	108	CTG ...	LPH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain

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