Transcript 18161 | MetamORF

Transcript

ID CARD

MetamORF ID

18161

ENSMUST00000020657

Name

Ube2b-201

Strand

Biotype

protein_coding

Start-end positions

51985497-52000484

CDS Start-stop positions

51986682-52000336

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:22210

Aliases

E2-14k,
E214K, ENSMUSG00000020390, HR6B,
MGI:102944, mHR6B, NCBI:22210,
OFF:Ube2b, Rad6b, Ube2b

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
20219	69	CTG ...	LNG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, Brain, Spleen_B_cell, Testis
23304	219	GTG ...	VYA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	CDS sORF	R1E, Spleen_B_cell, Testis
936835	36	ATC ...	IQM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
317849	90	CTG ...	LKN ...	Ribo-seq	CTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
20595	66	GTG ...	VAP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
22192	54	CTG ...	LKT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Testis
770813	81	GTG ...	VAA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
19371	78	CTG ...	LWG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
18160	78	GTG ...	VGG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, Spleen_B_cell, Testis
936098	192	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
293507	195	ATG ...	MNR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain
931804	99	ATT ...	IRP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC
18738	138	TTG ...	LFV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Overlapping sORF Upstream	Spleen_B_cell, Testis
91485	102	GTG ...	VIR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, Spleen_B_cell, Testis
937367	57	ATC ...	IFL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
22610	168	CTG ...	LAY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
319778	177	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
933080	84	ATT ...	IHN ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
23535	159	ATG ...	MFN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
18610	90	CTG ...	LRR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, Spleen_B_cell, Testis
935206	90	AAG ...	KRT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
21996	42	ATG ...	MFR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, Spleen_B_cell, Testis
932514	147	ATT ...	IAG ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC
19750	132	GTG ...	VQS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Overlapping sORF Upstream	Spleen_B_cell, Testis
315386	51	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
19590	30	ATG ...	MQL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Testis
23154	234	CTG ...	LCC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	CDS sORF	R1E, Spleen_B_cell, Testis
314037	30	ATG ...	MCM ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
307097	30	GTG ...	VEC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E

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