Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

88370

ID

ENSMUST00000001989

Name

Uba1-201

Strand

+

Biotype

protein_coding

Start-end positions

20662898-20683179

CDS Start-stop positions

20668449-20682513

CDS Relative positions

-

Sequences

Transcript sequence

GGT ...

Gene

ID

NCBI:22201

Aliases

A1S9,
ENSMUSG00000001924, MGI:98890, NCBI:22201,
OFF:Uba1, Sbx, Uba1,
Ube-1, Ube1x


Chr X

ORFs

136 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1526153 42

CTG ...

LVW ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
1281189 81

ATT ...

ILR ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
926524 54

ATT ...

IPM ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
766129 33

CTG ...

LTR ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
441465 51

ATG ...

MIS ...

Ribo-seq
ATG moderate 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Spleen_B_cell,
v6-5
1279875 75

AGG ...

RAC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
629912 48

ATG ...

MGS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, NSC
7185 75

CTG ...

LTL ...

Ribo-seq
CTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, Spleen_B_cell, v6-5
630822 39

CTG ...

LRC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
444059 69

GTG ...

VAA ...

Ribo-seq
GTG 8 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, E14,
Liver, R1E, Spleen_B_cell,
v6-5
284972 192

ATG ...

MTA ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
v6-5
443548 54

TTG ...

LGR ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, Spleen_B_cell
444293 168

TTG ...

LKA ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, NSC, Spleen_B_cell
766086 57

ATG ...

MSP ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF
285783 102

CTG ...

LNL ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell, v6-5
1280932 114

ATT ...

ILR ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
927593 60

AGG ...

RTS ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
443953 174

ATG ...

MNL ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
NSC, Spleen_B_cell
926829 96

AGG ...

RRR ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
285099 102

GTG ...

VTL ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
NSC, R1E, v6-5
926640 69

ATA ...

IIK ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
765090 33

CTG ...

LYL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
441876 39

CTG ...

LWL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
886339 108

ATG ...

MCG ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC, v6-5
285376 105

TTG ...

LAS ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, Spleen_B_cell,
v6-5
927322 81

ATT ...

ILE ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
285647 231

CTG ...

LIS ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, NSC, Spleen_B_cell,
v6-5
280451 81

GTG ...

VWL ...

Ribo-seq
GTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
NSC
285235 267

CTG ...

LSP ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, R1E, Spleen_B_cell,
v6-5
635283 156

TTG ...

LLN ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
928089 168

ATT ...

ILE ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
442150 84

GTG ...

VIL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, NSC, Spleen_B_cell,
v6-5
286956 300

TTG ...

LLR ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, R1E, Spleen_B_cell,
v6-5
629843 45

CTG ...

LLW ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
89136 45

TTG ...

LRS ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF, Neutrophil,
NSC, R1E, Testis
1336271 45

ATG ...

MSA ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
285992 99

ATG ...

MTA ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
R1E, v6-5
7011 102

ATG ...

MCV ...

Ribo-seq
ATG weak 8 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC, Spleen_B_cell,
v6-5
927056 96

ATA ...

IPL ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
886080 39

CTG ...

LLS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
628945 63

ATG ...

MNL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
632362 99

GTG ...

VSG ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, v6-5
286350 180

TTG ...

LRS ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
R1E, Spleen_B_cell, v6-5
927337 156

ATT ...

IAS ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
287287 102

ATG ...

MMT ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
NSC, R1E, v6-5
7299 33

TTG ...

LAV ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
635172 153

CTG ...

LNS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
284496 78

CTG ...

LIQ ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, NSC, R1E
630139 78

CTG ...

LES ...

Ribo-seq
CTG strong 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver,
MEF, Neutrophil, NSC,
v6-5
88873 72

GTG ...

VAA ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF, Neutrophil,
NSC, R1E, Testis
286452 171

GTG ...

VIL ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, NSC, R1E,
Spleen_B_cell, v6-5
443139 39

TTG ...

LKY ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
928378 174

AGG ...

RYP ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
287010 135

ATG ...

MGS ...

Ribo-seq
ATG 7 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, R1E,
v6-5
928459 117

ATA ...

IPL ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
285649 282

TTG ...

LVG ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
927984 72

AGG ...

RAC ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
89838 42

TTG ...

LRS ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    sORF
    Upstream
R1E, Testis
1525935 39

CTG ...

LCS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
928113 96

AAG ...

KLC ...

Ribo-seq
AAG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
286227 111

TTG ...

LGF ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Spleen_B_cell, v6-5
927049 90

AGG ...

RRR ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
444227 138

TTG ...

LPS ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
R1E, Spleen_B_cell
928332 78

ATT ...

ISL ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1390952 45

CTG ...

LCD ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
885905 90

TTG ...

LSC ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
631805 57

TTG ...

LKA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
443383 42

TTG ...

LGF ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
927926 183

ATC ...

IER ...

Ribo-seq
ATC 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
284920 117

TTG ...

LIL ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
R1E, Spleen_B_cell, v6-5
285265 117

GTG ...

VLW ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Neutrophil, NSC, R1E,
v6-5
635426 72

GTG ...

VEA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, NSC
1277441 54

AGG ...

RGP ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1593148 33

TTG ...

LAL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
443514 81

GTG ...

VTL ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
R1E, Spleen_B_cell, v6-5
285900 192

TTG ...

LVK ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
Spleen_B_cell, v6-5
417893 114

GTG ...

VAG ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
286133 66

CTG ...

LHP ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
R1E, v6-5
765582 30

ATG ...

MVW ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
927922 141

ATT ...

IPM ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
635189 84

CTG ...

LTT ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, NSC,
v6-5
440892 210

CTG ...

LPP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF, Neutrophil
444140 108

CTG ...

LIQ ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, NSC,
R1E, Spleen_B_cell
927935 129

ATT ...

ILA ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
442645 81

TTG ...

LQG ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1281555 270

AGG ...

RLS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
275828 69

CTG ...

LSA ...

Ribo-seq
CTG moderate 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, NSC, Spleen_B_cell,
v6-5
767379 36

CTG ...

LLS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
1573170 45

GTG ...

VQG ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
7062 144

TTG ...

LVK ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
442193 54

CTG ...

LCS ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
441634 78

TTG ...

LER ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, NSC, Spleen_B_cell,
v6-5
629972 108

TTG ...

LWS ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, NSC
928217 90

ATT ...

IST ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1591631 72

TTG ...

LGW ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
443980 108

TTG ...

LSR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
441397 42

CTG ...

LLW ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
285184 72

TTG ...

LWL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
R1E, v6-5
284974 120

CTG ...

LPN ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
R1E, Spleen_B_cell, v6-5
1281277 249

AAG ...

KEL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
444428 78

CTG ...

LHS ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, NSC,
Spleen_B_cell
628373 63

CTG ...

LTT ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, v6-5
88369 120

GTG ...

VIL ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF, Neutrophil,
NSC, R1E, Testis
440759 54

ATG ...

MMI ...

Ribo-seq
ATG moderate 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Spleen_B_cell,
v6-5
1277187 69

ATT ...

ILR ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1281152 54

AGG ...

RSK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
926058 72

ATG ...

MKA ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
285824 111

TTG ...

LRR ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
R1E, Spleen_B_cell, v6-5
635568 138

ATG ...

MYL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
1281713 57

ATC ...

IFG ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
443688 144

CTG ...

LTL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, R1E,
Spleen_B_cell
1116964 51

GTG ...

VER ...

Ribo-seq
GTG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1280767 201

AGG ...

RRT ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1592767 60

GTG ...

VER ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
279616 63

ATG ...

MRP ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
285915 78

GTG ...

VLC ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1526599 39

ATG ...

MLS ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC
927866 168

AAG ...

KPH ...

Ribo-seq
AAG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
441082 57

ATG ...

MMM ...

Ribo-seq
ATG weak 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
NSC, Spleen_B_cell, v6-5
442181 228

TTG ...

LFR ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    sORF
    Upstream
MEF, Neutrophil
444303 117

CTG ...

LGL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
444674 117

GTG ...

VIL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    sORF
    Upstream
B_cell, E14, Liver,
Spleen_B_cell
885786 39

ATG ...

MLL ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, Neutrophil, NSC
1281595 105

AGG ...

RMM ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
444454 165

TTG ...

LER ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, NSC, R1E,
Spleen_B_cell, v6-5
286305 279

GTG ...

VGS ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, R1E, Spleen_B_cell,
v6-5
927451 93

ATC ...

IPR ...

Ribo-seq
ATC weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
886298 33

TTG ...

LNV ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
1278056 66

ATT ...

IGD ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
278298 84

CTG ...

LVP ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
441659 48

CTG ...

LHS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
282983 66

TTG ...

LMR ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
443730 69

CTG ...

LRC ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, NSC,
R1E, Spleen_B_cell
286825 255

ATG ...

MTK ...

Ribo-seq
ATG 10 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC, R1E,
Spleen_B_cell, v6-5
443427 42

TTG ...

LML ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, NSC,
Spleen_B_cell
926851 153

AGG ...

RED ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5