Transcript 536623

Transcript

ID CARD

MetamORF ID

536623

ENSMUST00000151832

Name

Txnip-205

Strand

Biotype

retained_intron

Start-end positions

96559498-96560013

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:56338

Aliases

1200008J08Rik,
AA682105, ENSMUSG00000038393, Hyplip1,
MGI:1889549, NCBI:56338, OFF:Txnip,
Tbp-2, THIF, Txnip,
VDUP1

Chr 3

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
51961	42	GTG ...	VSL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
972530	201	AAG ...	KRL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
54449	243	ATG ...	MLT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, R1E
893548	117	ATC ...	ITL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
52157	234	TTG ...	LRT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, R1E
54371	84	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, R1E
54646	240	CTG ...	LTL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, R1E
538945	144	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E
53577	171	TTG ...	LPM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, R1E
53221	75	GTG ...	VQK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
1221695	120	ATT ...	IIS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1218444	147	AAG ...	KLS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1221486	222	ATC ...	IVV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
540477	159	GTG ...	VFT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, R1E
53258	258	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
1220370	234	ACG ...	TCS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
52847	165	ATG ...	MAR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, R1E
893436	153	AAG ...	KCS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
538755	198	GTG ...	VAR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
53833	261	GTG ...	VMT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
748651	219	GTG ...	VVP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, R1E
1222628	69	AAG ...	KIR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
53505	192	TTG ...	LWP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E
53405	36	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC

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