Transcript 38918 | MetamORF

Transcript

ID CARD

MetamORF ID

38918

ENSMUST00000134978

Name

Tubb5-202

Strand

Biotype

protein_coding

Start-end positions

35835901-35838208

CDS Start-stop positions

-35836223

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:22154

Aliases

AA408537,
AI596182, B130022C14Rik, ENSMUSG00000001525,
M(beta)5, MGI:107812, NCBI:22154,
OFF:Tubb5, Tubb5

Chr 17

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1575514	57	AGG ...	REI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	MEF
1575482	60	ATC ...	IQA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	MEF
13099	78	CTG ...	LGL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
379419	63	CTG ...	LSW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	E14, NSC, R1E, v6-5
796731	66	GTG ...	VHI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	E14, MEF, NSC, R1E, v6-5
36531	30	ATG ...	MSL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, R1E, v6-5
380320	144	TTG ...	LHL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF	E14, MEF, NSC, R1E, v6-5
411246	51	ATC ...	IVH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	C2C12
12760	129	TTG ...	LNS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
386966	78	CTG ...	LSW ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	sORF	E14, MEF, NSC, R1E, v6-5
379345	45	TTG ...	LAR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	E14, MEF, NSC, R1E, v6-5
957604	42	ATC ...	IQA ...	Ribo-seq	ATC		3	sORFs_org_Mouse	sORF	BMDC, E14, MEF
380805	54	TTG ...	LFG ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	sORF	E14, MEF, NSC, R1E, v6-5
37764	96	TTG ...	LEP ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	sORF	E14, Liver, MEF, NSC, R1E, v6-5
387356	69	TTG ...	LTL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	sORF	E14, MEF, NSC, R1E, v6-5
13060	123	TTG ...	LVD ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
379485	54	ATG ...	MWC ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	Brain, E14, R1E, v6-5
38917	48	GTG ...	VHI ...	Ribo-seq	GTG		20	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
385320	96	CTG ...	LRP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF	E14, MEF, NSC, R1E, v6-5
1575504	75	AGG ...	REI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	MEF
36416	123	CTG ...	LGQ ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
36365	39	GTG ...	VAS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF	Brain, E14, Neutrophil, v6-5

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