Transcript 5950 | MetamORF

Transcript

ID CARD

MetamORF ID

5950

ENSMUST00000072232

Name

Tmod3-201

Strand

Biotype

protein_coding

Start-end positions

75497707-75559657

CDS Start-stop positions

75500116-75532551

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:50875

Aliases

ENSMUSG00000058587,
MGI:1355315, NCBI:50875, OFF:Tmod3,
Tmod3, U-Tmod, UTMOD

Chr 9

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
434296	78	TTG ...	LQT ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
6904	93	GTG ...	VWA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Liver, MEF, Skin_tumor
925366	63	ATT ...	ISV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
922741	156	TTG ...	LRT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	E14
440281	123	GTG ...	VMC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
923023	102	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
259527	33	TTG ...	LQR ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
438120	36	GTG ...	VST ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, Spleen_B_cell
922046	129	AAG ...	KHW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
85459	117	GTG ...	VEV ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF, Testis
417584	72	ATT ...	IQT ...	Ribo-seq	ATT		3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, E14
440350	180	TTG ...	LFF ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
922965	39	AAG ...	KIL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
436224	75	ATG ...	MWL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell, v6-5
1693071	48	ATG ...	MQL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
925424	132	AAG ...	KHW ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
417268	231	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	C2C12, E14
6335	66	GTG ...	VST ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Skin_tumor
924714	144	ATA ...	IQT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1033713	30	TTG ...	LQL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, v6-5
436073	45	CTG ...	LPR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
435008	81	TTG ...	LRK ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF
86694	120	GTG ...	VVE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, MEF, Testis
1272557	75	AAG ...	KCF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
616502	30	TTG ...	LIE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
87431	63	TTG ...	LRT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Testis
922484	102	ATT ...	IRQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
921553	30	AAG ...	KKL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
440079	186	ATG ...	MLL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
438966	57	GTG ...	VLQ ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Spleen_B_cell, v6-5
440431	99	GTG ...	VST ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell, v6-5
439033	84	GTG ...	VGA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF
438982	54	GTG ...	VQW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	3T3, B_cell
435597	42	TTG ...	LMS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Spleen_B_cell, v6-5
417681	138	CTG ...	LAG ...	Ribo-seq	CTG		13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, C2C12, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
434245	66	GTG ...	VGA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF
436369	54	TTG ...	LDI ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil
439956	33	CTG ...	LCS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF
434890	39	ATG ...	MSH ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Spleen_B_cell, v6-5
922191	48	ATT ...	ISV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
925335	30	ATC ...	IRD ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
923677	201	TTG ...	LRH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	E14
922253	186	GTG ...	VWA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	E14
626153	102	ATG ...	MCP ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Glioma, Liver, MEF, MESC, R1E
417306	165	ATT ...	IQT ...	Ribo-seq	ATT		2	sORFs_org_Mouse	sORF Upstream	C2C12, E14
438179	57	ATG ...	MCW ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
433910	60	GTG ...	VMC ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
626973	90	CTG ...	LER ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E
273741	111	ATG ...	MIL ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E
1275232	78	AAG ...	KGK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
439571	114	CTG ...	LNL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, MEF
273576	105	TTG ...	LTP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, R1E
436450	81	CTG ...	LQG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
273802	120	CTG ...	LSW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E
5949	57	CTG ...	LHH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Skin_tumor
925230	120	ATT ...	IRQ ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
439004	141	TTG ...	LQT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Spleen_B_cell, v6-5
924460	207	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	E14
437240	93	ATG ...	MPF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
84138	42	ATG ...	MRT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Testis
439723	108	TTG ...	LRH ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, E14, MEF
274185	36	TTG ...	LTI ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
440341	120	ATG ...	MCW ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, v6-5

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