Transcript 123626

Transcript

ID CARD

MetamORF ID

123626

ENSMUST00000136410

Name

Tmem87a-205

Strand

Biotype

processed_transcript

Start-end positions

120355316-120404095

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:211499

Aliases

A930025J12Rik,
ENSMUSG00000033808, MGI:2441844, NCBI:211499,
OFF:Tmem87a, Tmem87a

Chr 2

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
501937	57	CTG ...	LDS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, R1E, Spleen_B_cell, v6-5
1215532	273	AGG ...	RNI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
501192	201	GTG ...	VFI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	NSC, R1E, Spleen_B_cell, v6-5
1054885	63	TTG ...	LYR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
125367	252	TTG ...	LYR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
123625	222	TTG ...	LAV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, Spleen_B_cell, v6-5
46662	48	TTG ...	LKW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
50467	117	TTG ...	LKW ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
499773	60	TTG ...	LLD ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, R1E, Spleen_B_cell, v6-5
499731	165	GTG ...	VTC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell, v6-5
47342	279	GTG ...	VKM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
109651	66	GTG ...	VQV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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