Transcript 167003

Transcript

ID CARD

MetamORF ID

167003

ENSMUST00000140931

Name

Tmem129-203

Strand

Biotype

retained_intron

Start-end positions

33653219-33657899

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:68366

Aliases

0610039G24Rik,
2410015J15Rik, AA409575, ENSMUSG00000019295,
MGI:1915616, NCBI:68366, OFF:Tmem129,
Tmem129

Chr 5

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
187679	96	ATG ...	MIS ...	Ribo-seq	ATG		1	Johnstone2016	Intronic sORF	Glioma, Liver, MEF, MESC
65200	195	GTG ...	VCF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
170262	201	TTG ...	LVK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
182133	36	GTG ...	VYM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
61734	120	TTG ...	LTV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
168052	39	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
175896	87	ATG ...	MGN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Intronic sORF	Brain, Glioma, Liver, MEF, MESC
65431	48	TTG ...	LAG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
63078	45	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
182539	195	GTG ...	VIV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
61464	147	GTG ...	VQN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
167002	63	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
66114	66	GTG ...	VQL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
62228	228	GTG ...	VTF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
176481	60	GTG ...	VPC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
559469	102	ATG ...	MPF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Intronic sORF	3T3, Glioma, Liver, MEF, MESC
179137	78	CTG ...	LAT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
61418	57	CTG ...	LDS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
65663	207	CTG ...	LVF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
61647	216	TTG ...	LAY ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
559391	87	CTG ...	LVG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
181138	189	GTG ...	VTD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
181754	216	CTG ...	LNS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
66084	135	TTG ...	LSG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
171991	30	ATG ...	MWL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Intronic sORF	3T3, Glioma, Liver, MEF, MESC
169676	198	GTG ...	VKT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
61876	84	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
176857	105	GTG ...	VDP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
65447	114	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
66005	144	GTG ...	VAQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
175968	48	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
65378	186	GTG ...	VFT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E

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