Transcript 58135 | MetamORF

Transcript

ID CARD

MetamORF ID

58135

ENSMUST00000123476

Name

Tmeff1-202

Strand

Biotype

protein_coding

Start-end positions

48585365-48662085

CDS Start-stop positions

48585470-48662085

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:230157

Aliases

A830033E11,
ENSMUSG00000028347, M7365, MGI:1926810,
NCBI:230157, OFF:Tmeff1, Tmeff1,
TR-1, Tr1

Chr 4

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
156262	147	GTG ...	VMK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
545845	48	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
152572	225	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
152735	54	GTG ...	VYK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1734229	186	ATG ...	MQV ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1229825	93	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
148412	57	GTG ...	VPY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1554077	48	ATG ...	MFL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
548962	54	ATG ...	MNH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1734739	33	ATG ...	MRR ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1231512	66	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
158330	216	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, R1E
58134	36	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	R1E, Testis
155732	126	CTG ...	LRL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
146611	84	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1227143	132	ATG ...	MFI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
156419	192	GTG ...	VRP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, R1E
156585	75	CTG ...	LFR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
157336	39	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
159906	90	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1227011	153	ATG ...	MQV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
154797	63	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
158705	144	ATG ...	MKG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14

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