Transcript 14074 | MetamORF

Transcript

ID CARD

MetamORF ID

14074

ENSMUST00000025989

Name

Tm9sf3-201

Strand

Biotype

protein_coding

Start-end positions

41210842-41264004

CDS Start-stop positions

41215072-41263854

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:107358

Aliases

1810073M23Rik,
2810031D16Rik, AI115521, AI413748,
AW146116, AW549777, ENSMUSG00000025016,
MGI:1914262, mKIAA4036, NCBI:107358,
OFF:Tm9sf3, Smbp, Tm9sf3

Chr 19

ORFs

95 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
409195	51	ATG ...	MPD ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell
962831	33	AGG ...	RNF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
403918	72	CTG ...	LRR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
962233	33	TTG ...	LDQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, NSC
720780	33	GTG ...	VPL ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, NSC, R1E
490338	66	GTG ...	VTA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil, Spleen_B_cell
1545967	276	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
719675	126	TTG ...	LGP ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, R1E
407452	102	ATG ...	MDK ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
404419	186	CTG ...	LCP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, Spleen_B_cell
42394	72	GTG ...	VWG ...	Ribo-seq	GTG	weak	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
42014	63	TTG ...	LVK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Testis
402297	93	GTG ...	VDE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
409783	165	TTG ...	LIA ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell
407573	30	TTG ...	LIH ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, v6-5
1203676	63	AAG ...	KRR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
807374	156	TTG ...	LYC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	CDS sORF	B_cell, BMDC
43046	57	TTG ...	LAL ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
725321	117	CTG ...	LQL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, v6-5
410931	108	CTG ...	LAW ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell
1545633	60	TTG ...	LSC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
489944	42	GTG ...	VPG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
1202286	108	ATG ...	MSD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
720559	48	ATG ...	MDE ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, v6-5
960417	33	ATC ...	ILI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
41440	36	ATG ...	MEM ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
1205566	54	ATT ...	IMP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
719926	39	ATG ...	MLS ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, v6-5
719922	45	ATG ...	MGK ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF
725505	57	GTG ...	VKE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC
91949	84	TTG ...	LKI ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, v6-5
1201608	60	ACG ...	TSM ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
42105	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, R1E, Testis, v6-5
490222	165	CTG ...	LSA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Spleen_B_cell
1205391	81	ATT ...	ITM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
963191	114	ACG ...	TFT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
403508	147	TTG ...	LLH ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
491363	144	TTG ...	LQA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
408041	33	GTG ...	VAW ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF
1204291	42	ATT ...	ITM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
408325	51	ATG ...	MKM ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF
962164	39	AAG ...	KIT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1204612	78	ATC ...	IDS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
409319	60	TTG ...	LIH ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
1458776	174	GTG ...	VLN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	BMDC
961329	51	ACG ...	TFT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
41303	36	TTG ...	LLC ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
807292	30	ATG ...	MLD ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil
92113	33	GTG ...	VAW ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF
1158766	54	GTG ...	VWH ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
962414	42	ATT ...	ILH ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
401487	42	ATG ...	MPD ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell
723792	66	ATG ...	MAY ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil
405812	45	TTG ...	LCM ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
42726	51	CTG ...	LDV ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
14073	30	ATG ...	MEI ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Skin_tumor, Testis, v6-5
1364389	69	GTG ...	VKE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1201484	48	ATC ...	IDS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1364679	30	GTG ...	VAL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF
721145	36	ATG ...	MPL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC
401867	39	CTG ...	LCG ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, NSC, Spleen_B_cell
488376	171	GTG ...	VRL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Spleen_B_cell
726239	81	TTG ...	LDQ ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
403249	39	ATG ...	MKL ...	Ribo-seq	ATG	moderate	17	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
409879	45	TTG ...	LEE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
407943	54	TTG ...	LKI ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, v6-5
42689	33	CTG ...	LCL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Testis, v6-5
405970	60	TTG ...	LFA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, v6-5
960795	42	ATC ...	IAS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
961312	30	ATT ...	ILL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
408160	78	CTG ...	LAW ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, NSC, Spleen_B_cell
963426	63	ATC ...	ILI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
41473	54	ATG ...	MAG ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, Testis, v6-5
1201335	45	ATT ...	IMP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
92034	108	TTG ...	LFA ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, v6-5
1205138	54	ACG ...	TGT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1204059	66	ATA ...	IKR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
406583	183	CTG ...	LEA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
41525	39	TTG ...	LAT ...	Ribo-seq	TTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
92139	87	ATG ...	MTY ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil
409219	60	GTG ...	VEQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC
403581	42	TTG ...	LPG ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, v6-5
961298	42	AGG ...	RCM ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
403851	51	ATG ...	MRL ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, v6-5
408592	114	GTG ...	VGR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, MEF, Spleen_B_cell
1204022	102	ACG ...	TGT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
720427	60	GTG ...	VKQ ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil
488534	129	CTG ...	LLG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell
1201819	198	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
724980	75	ATG ...	MPL ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
404588	144	TTG ...	LHL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
722567	69	CTG ...	LQL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, v6-5
403081	138	CTG ...	LFL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, v6-5
42548	66	TTG ...	LLV ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Testis
409075	135	CTG ...	LRR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5

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