Transcript 16826 | MetamORF

Transcript

ID CARD

MetamORF ID

16826

ENSMUST00000198030

Name

Tm4sf1-206

Strand

Biotype

processed_transcript

Start-end positions

57287516-57294552

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:17112

Aliases

ENSMUSG00000027800,
L6, M3s1, MGI:104678,
NCBI:17112, OFF:Tm4sf1, Tm4sf1

Chr 3

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
538131	42	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
539043	51	ATG ...	MEC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
140144	96	TTG ...	LWH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
749079	111	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
143384	144	GTG ...	VEW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, v6-5
1730124	105	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1730508	198	GTG ...	VEW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
143826	267	TTG ...	LAE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, v6-5
537911	90	CTG ...	LCH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1729981	243	CTG ...	LNS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1729371	96	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
141160	189	CTG ...	LNS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF
142478	84	TTG ...	LCL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF
1730520	90	TTG ...	LAE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1729840	150	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
131179	102	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
16825	69	TTG ...	LGW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
143955	111	TTG ...	LAF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, v6-5
137598	126	TTG ...	LES ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
142594	282	GTG ...	VAS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, v6-5
132899	54	ATG ...	MPM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1729076	129	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
538037	30	GTG ...	VAI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1173937	141	CTG ...	LIG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
138116	48	ATG ...	MEY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
142337	132	GTG ...	VTL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF
145104	273	CTG ...	LGL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, v6-5

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