Transcript 8145 | MetamORF

Transcript

ID CARD

MetamORF ID

8145

ENSMUST00000017610

Name

Timp2-201

Strand

Biotype

protein_coding

Start-end positions

118301069-118355506

CDS Start-stop positions

118303699-118355090

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:21858

Aliases

D11Bwg1104e,
ENSMUSG00000017466, MGI:98753, NCBI:21858,
OFF:Timp2, Timp-2, Timp2

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
22129	42	GTG ...	VHC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	Brain, Testis
18217	81	GTG ...	VPL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
419644	33	AGG ...	RRW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
1696275	45	GTG ...	VHF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
8604	45	TTG ...	LCP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Skin_tumor, Testis
936122	99	AGG ...	RKE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
18864	39	CTG ...	LSH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
295291	165	TTG ...	LTK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, C2C12
18150	57	CTG ...	LQL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Testis
18370	174	CTG ...	LRP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, C2C12, E14, Testis
91157	144	ATG ...	MGT ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, MEF, Testis
20553	78	ATG ...	MAR ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Testis
20846	54	ATG ...	MTS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Testis
299218	42	GTG ...	VVP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
23366	99	TTG ...	LQE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Testis
18470	51	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Testis
299124	102	ATG ...	MVL ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, MEF
931737	159	AAG ...	KRT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
935995	123	GTG ...	VRG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
18106	75	CTG ...	LDG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
17241	90	CTG ...	LTK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Testis
309557	51	TTG ...	LTS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
308562	48	TTG ...	LRV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
20514	186	ATG ...	MSA ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Testis, v6-5
305796	105	GTG ...	VMV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, MEF
21026	45	ATG ...	MAT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, C2C12, Testis
8144	54	GTG ...	VTS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Skin_tumor, Testis
419522	72	AGG ...	RRW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
419536	114	ATA ...	IEG ...	Ribo-seq	ATA	strong	3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, MEF
20233	66	CTG ...	LGH ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis

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