Transcript 195684

Transcript

ID CARD

MetamORF ID

195684

ENSMUST00000155378

Name

Thumpd3-208

Strand

Biotype

protein_coding

Start-end positions

113046302-113055967

CDS Start-stop positions

113047447-

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:14911

Aliases

AW556087,
ENSMUSG00000030264, Gt(ROSA)26asSor, Gtrosa26as,
MGI:1277973, NCBI:14911, OFF:Thumpd3,
Thumpd3

Chr 6

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1095595	42	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	v6-5
206064	147	GTG ...	VQV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	Brain
200158	45	TTG ...	LFR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, E14
198079	63	TTG ...	LIT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, v6-5
195683	123	GTG ...	VDK ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	Brain
197801	51	TTG ...	LWL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, v6-5
193962	39	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	NSC
202433	129	CTG ...	LTV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
196153	102	ATG ...	MRK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Brain
205688	93	ATG ...	MVR ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	Brain
204184	75	CTG ...	LLV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	MEF, NSC
204029	78	ATG ...	MPA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Brain
197528	72	TTG ...	LVL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF	MEF, NSC

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