Transcript 40504 | MetamORF

Transcript

ID CARD

MetamORF ID

40504

ENSMUST00000025137

Name

Thoc1-201

Strand

Biotype

protein_coding

Start-end positions

9958180-9995484

CDS Start-stop positions

9958193-9993616

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:225160

Aliases

3110002N20Rik,
AW107452, ENSMUSG00000024287, MGI:1919668,
NCBI:225160, NMP-84, OFF:Thoc1,
Thoc1

Chr 18

ORFs

58 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
717917	99	CTG ...	LMS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
1200041	75	AAG ...	KIL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
715437	45	CTG ...	LVT ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, v6-5
485256	69	TTG ...	LYC ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
1631171	39	ATG ...	MIL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1154648	48	CTG ...	LWK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E, v6-5
40503	60	ATG ...	MKK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis
717226	51	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1361020	33	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1198165	66	AGG ...	RIT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1198435	39	AGG ...	RRA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1198879	72	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1196355	39	AGG ...	RGA ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
803435	78	CTG ...	LFS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1632248	165	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1155360	36	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
1156546	99	GTG ...	VTV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1199419	81	AGG ...	RIT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1155723	87	TTG ...	LVS ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1155037	99	TTG ...	LPT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1155040	42	TTG ...	LTK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
1155024	30	TTG ...	LEN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
713849	39	GTG ...	VRM ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
714826	42	CTG ...	LKI ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, v6-5
716737	51	TTG ...	LLP ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E, v6-5
1632387	63	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
717936	78	TTG ...	LKI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF
1196434	66	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1156684	117	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1198184	45	AAG ...	KTL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1155591	84	GTG ...	VSS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
485840	39	CTG ...	LRP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, Spleen_B_cell
1197547	51	ATT ...	IEN ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1197076	39	AAG ...	KIK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199968	63	ATG ...	MKV ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
716999	96	ATG ...	MSN ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1198578	63	TTG ...	LKK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
1155622	102	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1361196	36	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
715309	33	ATG ...	MKT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1498844	51	ATG ...	MSN ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC
1199205	36	ATC ...	IPL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1867521	42	TTG ...	LTK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1155928	33	GTG ...	VED ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
1199444	126	CTG ...	LII ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
713211	30	CTG ...	LME ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
802245	33	TTG ...	LKI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, NSC
40506	36	CTG ...	LAR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Testis, v6-5
714205	48	GTG ...	VFV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
712677	48	CTG ...	LFS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
1199642	135	ATC ...	ISV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
713779	48	TTG ...	LPG ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E, v6-5
41133	60	ATG ...	MKK ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, R1E, Testis
1199486	90	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1631145	30	CTG ...	LRI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1631373	54	CTG ...	LMS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
484728	39	CTG ...	LIL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
1197200	48	ATT ...	ILV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14

Export data