Transcript 36067 | MetamORF

Transcript

ID CARD

MetamORF ID

36067

ENSMUST00000127719

Name

Tgif1-204

Strand

Biotype

protein_coding

Start-end positions

70844728-70849790

CDS Start-stop positions

-70846354

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:21815

Aliases

AA959811,
AI462167, ENSMUSG00000047407, MGI:1194497,
NCBI:21815, OFF:Tgif1, Tgif,
Tgif1

Chr 17

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
36707	198	ATG ...	MKT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	3T3, C2C12, E14, R1E, Testis
1194676	111	ATC ...	IPQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
37173	228	TTG ...	LLQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	3T3, R1E, Testis
36066	216	CTG ...	LAV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, E14, R1E, Testis
1193449	63	ATC ...	IPQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
38769	252	CTG ...	LRM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, E14, R1E, Testis
1190465	108	ACG ...	TGF ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
37242	84	ATG ...	MNT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	R1E, Testis
36477	150	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, R1E, Testis
39434	264	CTG ...	LAV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	3T3, E14, R1E, Spleen_B_cell, Testis
37870	225	TTG ...	LQH ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	3T3, E14, R1E, Testis
39216	198	CTG ...	LAR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	E14, R1E, Spleen_B_cell, Testis
1191273	51	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
39094	258	GTG ...	VTL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, E14, R1E, Testis
1196042	99	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
36558	210	GTG ...	VTL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, E14, R1E, Testis
39081	273	TTG ...	LQH ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	3T3, E14, R1E, Spleen_B_cell, Testis
38975	246	ATG ...	MKT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	3T3, E14, R1E, Spleen_B_cell, Testis
1193997	126	ATC ...	ICP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
38417	204	CTG ...	LRM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, E14, R1E, Testis
38673	132	ATG ...	MNT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	R1E, Testis
38822	276	TTG ...	LLQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	3T3, R1E, Spleen_B_cell, Testis
1195413	174	ATC ...	ICP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14

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