Transcript 8779 | MetamORF

Transcript

ID CARD

MetamORF ID

8779

ENSMUST00000192460

Name

Tagln2-204

Strand

Biotype

protein_coding

Start-end positions

172500245-172505852

CDS Start-stop positions

172505148-

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:21346

Aliases

2700094C18Rik,
ENSMUSG00000026547, MGI:1312985, NCBI:21346,
OFF:Tagln2, Sm22a, Sm22B,
SM22beta, Tagln2

Chr 1

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
473249	60	CTG ...	LQP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	BMDC, E14, MEF, R1E, Spleen_B_cell
470593	51	CTG ...	LSC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, MEF, Spleen_B_cell
859022	72	GTG ...	VRA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Liver, Neutrophil
471628	42	GTG ...	VRS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	BMDC, E14, MEF, Spleen_B_cell
944146	132	ATC ...	IQP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	BMDC
960632	117	ACG ...	TRI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	BMDC
14161	45	CTG ...	LAV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Skin_tumor, Spleen_B_cell
419218	147	AGG ...	RCS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
959300	66	AGG ...	RTW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
499704	93	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell
9627	132	TTG ...	LRS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Skin_tumor, Spleen_B_cell
439343	36	GTG ...	VRA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF	BMDC, E14, MEF, R1E, Spleen_B_cell
953542	117	ACG ...	TVS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	BMDC
498023	102	CTG ...	LSC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell, v6-5
500777	111	CTG ...	LQP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Spleen_B_cell, v6-5
14956	69	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Skin_tumor, Spleen_B_cell
8778	39	GTG ...	VRT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	BMDC, Skin_tumor, Spleen_B_cell

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