Transcript 16397 | MetamORF

Transcript

ID CARD

MetamORF ID

16397

ENSMUST00000111230

Name

Tagln2-202

Strand

Biotype

protein_coding

Start-end positions

172500047-172507380

CDS Start-stop positions

172505148-172506708

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:21346

Aliases

2700094C18Rik,
ENSMUSG00000026547, MGI:1312985, NCBI:21346,
OFF:Tagln2, Sm22a, Sm22B,
SM22beta, Tagln2

Chr 1

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
706459	48	TTG ...	LGC ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, v6-5
414947	195	AGG ...	RCS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12
497099	189	CTG ...	LRR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell
496300	147	TTG ...	LSS ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
8778	39	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
497666	117	GTG ...	VRT ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, v6-5
14161	45	CTG ...	LAV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
473249	60	CTG ...	LQP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF
490493	93	CTG ...	LAV ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, v6-5
1190142	54	AGG ...	RRT ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
975556	33	ATT ...	IHC ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
14956	69	GTG ...	VRT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
976190	81	ATC ...	IPT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
546866	87	CTG ...	LGI ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, v6-5
972903	105	AGG ...	RKE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
415350	168	ACG ...	TTR ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, MEF
411269	120	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
493572	180	TTG ...	LRS ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, v6-5
972306	114	AGG ...	RTW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
16396	111	CTG ...	LGR ...	Ribo-seq	CTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
894250	165	ACG ...	TRI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
470593	51	CTG ...	LSC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF
496724	87	GTG ...	VRT ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, v6-5
593472	90	TTG ...	LCA ...	Ribo-seq	TTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, v6-5
9627	132	TTG ...	LRS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
738163	99	ATG ...	MGS ...	Ribo-seq	ATG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, v6-5
471628	42	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF
439343	36	GTG ...	VRA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF
950022	90	ATC ...	ISG ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, MEF
946813	180	ATC ...	IQG ...	Ribo-seq	ATC	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, E14, MEF
975909	57	ACG ...	TAD ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Downstream Overlapping sORF	MEF
976070	102	ACG ...	TMG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF

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