Transcript 39529 | MetamORF

Transcript

ID CARD

MetamORF ID

39529

ENSMUST00000066272

Name

Taf7-201

Strand

Biotype

protein_coding

Start-end positions

37640491-37644204

CDS Start-stop positions

37642487-37643512

CDS Relative positions

281-1306

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:24074

Aliases

55kDa,
AI607308, BB007175, ENSMUSG00000051316,
MGI:1346348, NCBI:24074, OFF:Taf7,
Taf2f, Taf7, TAFII55

Chr 18

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
802160	93	TTG ...	LLK ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
40217	33	ATG ...	MQK ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, R1E, Testis, v6-5
40070	69	TTG ...	LSE ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis, v6-5
1199238	117	ATA ...	IGR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
801649	30	ATG ...	MWK ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, R1E
1156146	54	TTG ...	LSP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, v6-5
802243	84	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
1196428	45	ATG ...	MKE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
1199151	45	AAG ...	KKP ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1361396	99	TTG ...	LSY ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
39994	81	CTG ...	LIP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis
485374	39	CTG ...	LRK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, Spleen_B_cell, v6-5
40066	123	ATG ...	MVT ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, R1E, Testis, v6-5
1197142	117	AGG ...	RQF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1198120	159	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1199971	30	AAG ...	KLS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF Upstream	E14
1199357	66	ACG ...	THR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	E14
39528	120	GTG ...	VTY ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis
1198297	75	ACG ...	TAL ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
40832	42	CTG ...	LQN ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis
1198720	51	AAG ...	KKM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
39843	33	TTG ...	LFG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E, Testis
1197417	63	GTG ...	VGK ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
40825	84	ATG ...	MGV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, R1E, Testis, v6-5
1196873	75	AGG ...	RSS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
40679	87	CTG ...	LMG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis, v6-5
40677	48	TTG ...	LLK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Testis, v6-5
485947	60	ATG ...	MSF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Spleen_B_cell, v6-5
801711	30	CTG ...	LAT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
40418	105	CTG ...	LWR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis
486826	51	CTG ...	LLC ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, R1E, Spleen_B_cell
1197748	105	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	E14, Glioma, Liver, MEF, MESC, R1E
1197107	138	AGG ...	REL ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	sORF Upstream	E14
1197568	57	ATC ...	IEC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
40123	90	CTG ...	LPL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis
1199041	90	ACG ...	TPR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
486593	105	CTG ...	LPG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
1198023	120	ACG ...	THR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1154784	33	TTG ...	LCY ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
1196444	60	AAG ...	KAW ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199287	45	GTG ...	VFG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
40550	84	CTG ...	LLI ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Testis
485535	39	ATG ...	MTS ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Spleen_B_cell, v6-5
486962	54	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
484862	63	ATG ...	MMS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
485349	45	TTG ...	LTL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, Spleen_B_cell, v6-5
1196949	75	GTG ...	VRG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1198503	30	AGG ...	RNV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
39990	81	TTG ...	LEP ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E, Spleen_B_cell, Testis
1198490	105	AGG ...	RQA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1196850	36	AAG ...	KTG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
800869	102	TTG ...	LLA ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF Upstream	B_cell, E14
1196917	54	ATA ...	IRT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
40751	87	ATG ...	MSE ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis
486294	42	TTG ...	LNL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
1197266	42	AAG ...	KPR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1197435	33	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1197712	33	ATC ...	ISW ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1197393	33	AAG ...	KIW ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1197956	60	AAG ...	KKP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
801531	90	CTG ...	LKM ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, v6-5
1198982	36	ACG ...	TVP ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1198528	87	AAG ...	KTA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
800912	72	ATG ...	MNP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, R1E

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