Transcript 1121953

Transcript

ID CARD

MetamORF ID

1121953

ENSMUST00000133170

Name

Taf15-203

Strand

Biotype

protein_coding

Start-end positions

83489027-83506743

CDS Start-stop positions

-83506457

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:70439

Aliases

2610111C21Rik,
68kDa, ENSMUSG00000020680, MGI:1917689,
NCBI:70439, OFF:Taf15, Taf15,
Taf2n, TAFII68

Chr 11

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
931001	102	AAG ...	KWR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1293243	84	AGG ...	RRQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1286255	96	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1284399	33	AGG ...	RWW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1290641	36	AGG ...	RKA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
1290265	48	AGG ...	RTW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
1293718	72	AAG ...	KWW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1292917	288	ATC ...	IEV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
1287848	156	AAG ...	KTQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1294194	90	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1701535	45	GTG ...	VVE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
649294	90	CTG ...	LII ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	E14, v6-5
1292701	42	ATT ...	IYE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1293831	54	ATT ...	IYE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1290260	69	AGG ...	RRP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
1292660	78	AAG ...	KWW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1293403	114	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1295611	45	AGG ...	RWW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1292198	120	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1284800	171	ATC ...	IFT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
1292492	57	AGG ...	RWI ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
1288799	249	ATG ...	MEE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1284969	297	ATG ...	MEV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1294769	57	AGG ...	RRP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1293936	96	AAG ...	KWR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
297009	39	ATG ...	MWK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	sORF	E14, Liver, MEF, NSC, R1E
890205	42	GTG ...	VCL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
1531826	96	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
1284198	39	AGG ...	RWL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
1531657	78	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
1293399	111	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1285566	63	AGG ...	RRP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
643379	51	TTG ...	LGR ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	v6-5
1529776	90	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
1291518	237	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
651427	63	TTG ...	LCK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF	MEF, v6-5
1531588	57	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
1294874	138	AGG ...	RLW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1292636	60	AGG ...	RWL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14

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