Transcript 16207 | MetamORF

Transcript

ID CARD

MetamORF ID

16207

ENSMUST00000015011

Name

Surf4-201

Strand

Biotype

protein_coding

Start-end positions

26920040-26933928

CDS Start-stop positions

26921905-26933322

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:20932

Aliases

AL033340,
AL033373, ENSMUSG00000014867, MGI:98445,
NCBI:20932, OFF:Surf4, Surf-4,
Surf4

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14797	90	CTG ...	LCF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
45947	60	CTG ...	LWL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell, Testis
16280	69	ATG ...	MPA ...	Ribo-seq	ATG		20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
44364	78	TTG ...	LLV ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell, Testis
46712	39	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, Spleen_B_cell, Testis
969903	63	GTG ...	VCP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
14997	51	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
499209	102	TTG ...	LEA ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, BMDC, MEF, Neutrophil, Spleen_B_cell
971734	33	AGA ...	RQL ...	Ribo-seq	AGA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
498657	81	CTG ...	LWR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, MEF, Spleen_B_cell
47362	57	GTG ...	VRA ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell, Testis
499490	69	TTG ...	LPS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell
44062	90	GTG ...	VSS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell, Testis
48140	117	ATG ...	MAS ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell, Testis
44228	75	CTG ...	LVS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell, Testis
965261	51	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
1052909	75	TTG ...	LAQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, Neutrophil
44139	57	CTG ...	LPD ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell, Testis
47523	72	GTG ...	VSQ ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell, Testis
16517	60	TTG ...	LGC ...	Ribo-seq	TTG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
47195	54	GTG ...	VAT ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell, Testis
495879	57	CTG ...	LAV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
44892	81	GTG ...	VTI ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell, Testis
48109	66	CTG ...	LEL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell, Testis
16206	51	TTG ...	LES ...	Ribo-seq	TTG		20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5

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