Transcript 52223 | MetamORF

Transcript

ID CARD

MetamORF ID

52223

ENSMUST00000197502

Name

Supt20-203

Strand

Biotype

protein_coding

Start-end positions

54692807-54728636

CDS Start-stop positions

54695205-54728481

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:56790

Aliases

AA667204,
AI450544, D3Ertd300e, ENSMUSG00000027751,
Fam48a, MGI:1929651, NCBI:56790,
OFF:Supt20, p38IP, Supt20,
Supt20h

Chr 3

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1170991	36	TTG ...	LKN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
53681	63	CTG ...	LEN ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, Testis, v6-5
1651927	42	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
751323	111	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1173006	48	ATG ...	MTY ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
748467	66	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
539727	39	CTG ...	LTT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
543387	69	ATG ...	MLK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1170874	30	TTG ...	LWM ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
542111	81	TTG ...	LIS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
751152	39	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
751305	78	TTG ...	LIS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1171156	33	GTG ...	VFS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1650852	51	ATG ...	MTY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
53862	36	ATG ...	MLL ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, MEF, Neutrophil, Testis, v6-5
1172851	39	ATG ...	MLK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1171609	30	ATG ...	MPS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1729368	33	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
52222	90	TTG ...	LGI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
1506703	45	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
541985	42	CTG ...	LTT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
542169	213	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
504381	33	ATG ...	MVS ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF Upstream	NSC, v6-5
1220157	30	AGG ...	RAE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1506159	36	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
503646	48	TTG ...	LAE ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, v6-5
1650907	39	TTG ...	LKN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
502638	45	CTG ...	LQG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil

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