Transcript 45240 | MetamORF

Transcript

ID CARD

MetamORF ID

45240

ENSMUST00000135488

Name

Strbp-203

Strand

Biotype

processed_transcript

Start-end positions

37634928-37703348

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:20744

Aliases

6430510M02Rik,
AI852513, C230082I21Rik, C86322,
ENSMUSG00000026915, MGI:104626, NCBI:20744,
OFF:Strbp, Spnr, Strbp

Chr 2

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
729433	48	TTG ...	LRY ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
810512	150	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1160992	48	GTG ...	VWC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
46121	102	ATG ...	MRR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Testis
49828	243	CTG ...	LLN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, Testis
807807	147	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
47215	57	CTG ...	LLN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, Testis
46975	99	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
45886	69	GTG ...	VKT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Testis
46571	114	TTG ...	LKV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
48387	183	GTG ...	VKH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
45239	123	TTG ...	LLI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
47422	120	CTG ...	LIK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
49233	177	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
1367512	126	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1168137	138	GTG ...	VQN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
104252	30	CTG ...	LWK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
98771	78	CTG ...	LSH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1365935	84	CTG ...	LDE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
736154	45	TTG ...	LLI ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
46271	120	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
502248	156	CTG ...	LRS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
1366798	42	GTG ...	VQR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
99618	36	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
114685	63	GTG ...	VSS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
492831	63	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
46999	138	TTG ...	LVA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
46342	162	TTG ...	LCG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Testis, v6-5
502132	159	GTG ...	VLR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
49873	285	CTG ...	LEL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, Testis

Export data