Transcript 148678

Transcript

ID CARD

MetamORF ID

148678

ENSMUST00000143371

Name

Stoml2-210

Strand

Biotype

processed_transcript

Start-end positions

43029773-43030600

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:66592

Aliases

0610038F01Rik,
ENSMUSG00000028455, MGI:1913842, MSLP2,
NCBI:66592, OFF:Stoml2, SLP-2,
Stoml2

Chr 4

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
149053	129	CTG ...	LNV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
149842	99	ATG ...	MPT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
166048	243	GTG ...	VQS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
151540	84	ATG ...	MPS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
148677	90	TTG ...	LWM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
164992	282	CTG ...	LNV ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
165764	264	GTG ...	VLD ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
156417	111	GTG ...	VLD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
165547	273	CTG ...	LIP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
152272	54	ATG ...	MCR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
827723	213	GTG ...	VPE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Neutrophil, R1E

Export data