Transcript 49713 | MetamORF

Transcript

ID CARD

MetamORF ID

49713

ENSMUST00000123467

Name

Ssrp1-202

Strand

Biotype

processed_transcript

Start-end positions

85037453-85039271

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:20833

Aliases

C81323,
ENSMUSG00000027067, Hmg1-rs1, Hmgi-rs3,
Hmgox, MGI:107912, NCBI:20833,
OFF:Ssrp1, Ssrp1, T160

Chr 2

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
49712	285	GTG ...	VCS ...	Ribo-seq	GTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1052536	162	GTG ...	VAL ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
50705	243	TTG ...	LEF ...	Ribo-seq	TTG		18	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
114228	111	CTG ...	LLD ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
51305	261	GTG ...	VNM ...	Ribo-seq	GTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
812776	33	CTG ...	LAS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, v6-5
493144	30	CTG ...	LCA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, Spleen_B_cell
1503682	30	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
110149	189	TTG ...	LSR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
497305	42	ATG ...	MGM ...	Ribo-seq	ATG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
103896	144	GTG ...	VDN ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
1216851	291	AGG ...	RAV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
106169	108	CTG ...	LDI ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
1164421	144	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
112889	180	ATG ...	MAE ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
50849	114	TTG ...	LTE ...	Ribo-seq	TTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
498537	66	ATG ...	MGL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
807838	156	TTG ...	LFL ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
50751	183	TTG ...	LSR ...	Ribo-seq	TTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1215486	192	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
49734	66	CTG ...	LLT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, Neutrophil, NSC, Testis
107150	120	TTG ...	LTE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
1054287	198	TTG ...	LRH ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, v6-5
51649	300	GTG ...	VQP ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
496075	81	TTG ...	LGH ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell
51056	216	GTG ...	VKG ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
813012	117	TTG ...	LLI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
95221	72	CTG ...	LLT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
412963	228	ATC ...	IFQ ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
111026	36	ATG ...	MST ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC
50707	138	GTG ...	VDN ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5

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