Transcript 26381 | MetamORF

Transcript

ID CARD

MetamORF ID

26381

ENSMUST00000021864

Name

Ssr1-201

Strand

Biotype

protein_coding

Start-end positions

37971401-37994217

CDS Start-stop positions

37979739-37994083

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:107513

Aliases

2510001K09Rik,
6330400D04, AI159733, AI452176,
ENSMUSG00000021427, MGI:105082, NCBI:107513,
OFF:Ssr1, SSR, Ssr1,
TRAPA

Chr 13

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
27637	57	ATG ...	MYP ...	Ribo-seq	ATG	moderate	16	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1301683	60	ATT ...	IPS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
28000	63	TTG ...	LLL ...	Ribo-seq	TTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
26652	36	TTG ...	LAF ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
26654	51	ATG ...	MLS ...	Ribo-seq	ATG	moderate	19	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
26602	63	ATG ...	MYS ...	Ribo-seq	ATG	moderate	20	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
27241	159	ATG ...	MKS ...	Ribo-seq	ATG		20	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1699269	150	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1609458	66	CTG ...	LLS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream sORF	MEF
27672	63	TTG ...	LLV ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1305511	93	ATA ...	ICS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1610954	36	CTG ...	LSS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Downstream sORF	MEF
1698761	90	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
1699143	123	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1610635	60	ATG ...	MSV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
1611186	54	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
28089	36	CTG ...	LDS ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1609143	66	GTG ...	VWM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
1303947	111	ATC ...	IAR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
28018	111	GTG ...	VPE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
28324	75	TTG ...	LGF ...	Ribo-seq	TTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
26987	48	CTG ...	LQS ...	Ribo-seq	CTG	weak	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1699211	75	ATG ...	MSN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
26856	66	ATG ...	MPR ...	Ribo-seq	ATG	weak	21	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, Testis, v6-5
27042	60	CTG ...	LVL ...	Ribo-seq	CTG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
26380	48	TTG ...	LAL ...	Ribo-seq	TTG	moderate	19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
27397	39	TTG ...	LLA ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
27550	66	TTG ...	LSI ...	Ribo-seq	TTG	weak	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1608473	30	ATG ...	MIE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
27026	48	GTG ...	VNQ ...	Ribo-seq	GTG	weak	15	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
26728	186	GTG ...	VPR ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
1699194	96	CTG ...	LGM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
28192	57	TTG ...	LAF ...	Ribo-seq	TTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1610223	63	CTG ...	LSA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream sORF	MEF
27440	48	CTG ...	LSS ...	Ribo-seq	CTG	moderate	18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1609676	72	GTG ...	VWV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
943530	33	AAG ...	KEK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1698860	75	ATG ...	MES ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
28259	60	TTG ...	LLA ...	Ribo-seq	TTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
27246	42	TTG ...	LLL ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
942804	144	ATT ...	ITA ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
941783	63	AGG ...	RTT ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
944282	33	AAG ...	KEK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1608530	51	CTG ...	LLM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream sORF	MEF
1699289	141	GTG ...	VSI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1608318	42	GTG ...	VKC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1609249	54	GTG ...	VCT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream sORF	MEF
26780	36	CTG ...	LDS ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1303425	72	ATA ...	ICS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1610891	102	CTG ...	LCA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	MEF
26950	54	TTG ...	LGF ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
942075	54	AGG ...	RML ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
27912	84	TTG ...	LLV ...	Ribo-seq	TTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1698754	126	ATG ...	MLG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
944280	144	ATC ...	IRS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
1610676	42	TTG ...	LPV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1610261	54	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream sORF	MEF
1610795	33	TTG ...	LKV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1698895	105	CTG ...	LLC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1610687	45	ATG ...	MCG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Downstream sORF	MEF
26694	30	TTG ...	LKM ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
28236	81	CTG ...	LVL ...	Ribo-seq	CTG		19	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5

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