Transcript 337876

Transcript

ID CARD

MetamORF ID

337876

ENSMUST00000156547

Name

Ssbp2-209

Strand

Biotype

processed_transcript

Start-end positions

91460283-91688866

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:66970

Aliases

1500004K09Rik,
2310079I02Rik, 9330163K02Rik, A830008M03Rik,
AU067692, AW558684, ENSMUSG00000003992,
Hspc116, MGI:1914220, NCBI:66970,
OFF:Ssbp2, Ssbp2, SSDP2

Chr 13

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
335274	45	TTG ...	LGS ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
1535305	78	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1534977	42	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
337875	45	CTG ...	LNA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
334030	33	CTG ...	LCS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
335815	69	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
337557	90	GTG ...	VYF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1534821	63	TTG ...	LFV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
672528	42	GTG ...	VNT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
27267	42	TTG ...	LGE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain

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