Transcript 914 | MetamORF

Transcript

ID CARD

MetamORF ID

914

ENSMUST00000150619

Name

Srrm1-212

Strand

Biotype

retained_intron

Start-end positions

135322476-135353134

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:51796

Aliases

AA407769,
ENSMUSG00000028809, MGI:1858303, NCBI:51796,
OFF:Srrm1, POP101, Srm160,
Srrm1

Chr 4

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
824416	30	TTG ...	LSL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, NSC
824583	36	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
1178617	78	TTG ...	LHV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
549735	63	CTG ...	LRS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, NSC
56265	129	GTG ...	VDM ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, NSC
56061	63	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
913	42	GTG ...	VHK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	NSC, Skin_tumor
824166	39	ATG ...	MLS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, NSC
511075	123	CTG ...	LSG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
57599	57	GTG ...	VRS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, NSC
57173	108	TTG ...	LEV ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, NSC
1652952	78	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
826206	81	GTG ...	VFA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, NSC
552222	51	CTG ...	LAP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
825224	36	TTG ...	LSL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, NSC
823956	165	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
57892	30	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1657379	72	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1653141	42	ATG ...	MLE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
546154	51	CTG ...	LPQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
550140	42	ATG ...	MML ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, NSC
1655278	51	ATG ...	MGR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
554520	54	TTG ...	LDS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, NSC

Export data