Transcript 292123

Transcript

ID CARD

MetamORF ID

292123

ENSMUST00000128808

Name

Srp68-204

Strand

Biotype

processed_transcript

Start-end positions

116248796-116261338

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:217337

Aliases

2610024I03Rik,
ENSMUSG00000020780, MGI:1917447, NCBI:217337,
OFF:Srp68, Srp68

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
293805	99	CTG ...	LQQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
934847	108	AGG ...	RAL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
299079	114	TTG ...	LHR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil
292953	102	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
292122	156	CTG ...	LST ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil
1078662	54	CTG ...	LCR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1080048	60	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
306110	171	CTG ...	LTY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil
1037429	39	GTG ...	VKK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
303734	66	ATG ...	MTA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
300117	30	GTG ...	VSN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain

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