Transcript 50584 | MetamORF

Transcript

ID CARD

MetamORF ID

50584

ENSMUST00000110862

Name

Srp14-202

Strand

Biotype

protein_coding

Start-end positions

118478565-118479635

CDS Start-stop positions

118478837-118479614

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:20813

Aliases

14kDa,
AW536328, ENSMUSG00000009549, MGI:107169,
NCBI:20813, OFF:Srp14, Srp14

Chr 2

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
46290	30	ATG ...	MGK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
46636	78	ATG ...	MTV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, R1E, Spleen_B_cell
49850	45	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver, R1E, Spleen_B_cell
51335	279	GTG ...	VLQ ...	Ribo-seq	GTG		7	sORFs_org_Mouse	CDS sORF	B_cell, Brain, E14, Liver, Neutrophil, NSC, Testis
49488	42	CTG ...	LWR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, R1E, Spleen_B_cell
1371980	105	CTG ...	LPN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
49212	45	GTG ...	VPL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E, Spleen_B_cell
50583	276	TTG ...	LQF ...	Ribo-seq	TTG		8	sORFs_org_Mouse	CDS sORF	B_cell, Brain, E14, Liver, Neutrophil, NSC, Spleen_B_cell, Testis
51419	45	GTG ...	VPL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E, Spleen_B_cell
1505143	132	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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