Transcript 171974

Transcript

ID CARD

MetamORF ID

171974

ENSMUST00000138699

Name

Srd5a3-206

Strand

Biotype

retained_intron

Start-end positions

76140271-76151515

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:57357

Aliases

1110025P14Rik,
A430076C09, AV364670, AW987574,
D730040M03Rik, ENSMUSG00000029233, H5ar,
MGI:1930252, NCBI:57357, OFF:Srd5a3,
S5AR 3, Srd5a2l, Srd5a3

Chr 5

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
902790	126	ACG ...	TGR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
183854	144	CTG ...	LPS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
183266	54	CTG ...	LAT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
61482	63	ATG ...	MQP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
180977	126	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
169044	75	GTG ...	VSS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
180116	66	CTG ...	LFR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
567840	192	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
562134	186	TTG ...	LVF ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
174513	132	CTG ...	LQL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
181423	81	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
903278	60	AAG ...	KQS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
180515	183	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
171973	111	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
179389	159	CTG ...	LSW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
176672	93	TTG ...	LSA ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
1468352	168	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
561351	30	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
565670	183	GTG ...	VFL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
184781	108	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
559161	204	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
63005	48	TTG ...	LCS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
903532	210	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
182829	192	CTG ...	LNP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain

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