Transcript 23893 | MetamORF

Transcript

ID CARD

MetamORF ID

23893

ENSMUST00000015981

Name

Sqstm1-201

Strand

Biotype

protein_coding

Start-end positions

50199366-50210791

CDS Start-stop positions

50200790-50210757

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:18412

Aliases

A170,
ENSMUSG00000015837, MGI:107931, NCBI:18412,
OFF:Sqstm1, OSF-6, Osi,
p62, Sqstm1, STAP,
STONE14

Chr 11

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
303696	135	CTG ...	LWW ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
317418	180	ATG ...	MVA ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, v6-5
1396745	36	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
295337	153	GTG ...	VMV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, v6-5
298132	33	TTG ...	LQR ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, v6-5
294326	87	CTG ...	LAW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF
316751	138	TTG ...	LLR ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Spleen_B_cell, v6-5
319384	138	GTG ...	VCA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, v6-5
305713	36	CTG ...	LLH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF
658997	78	GTG ...	VQG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF
641385	42	GTG ...	VLR ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC
303524	108	GTG ...	VCA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, v6-5
317698	144	TTG ...	LSL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
292508	237	CTG ...	LFR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, E14, Liver, MEF, v6-5
648357	81	GTG ...	VQR ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, v6-5
319157	165	CTG ...	LWW ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
643774	108	GTG ...	VQC ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, v6-5
768983	48	TTG ...	LRL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Neutrophil, v6-5
311205	45	CTG ...	LDT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, v6-5
315106	105	ATG ...	MTS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF
305547	78	CTG ...	LGD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF
639750	75	GTG ...	VPA ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, v6-5
656692	135	TTG ...	LAG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF
650143	45	ATG ...	MRM ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, Neutrophil, NSC, v6-5
651213	99	GTG ...	VPR ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, v6-5
773664	33	ATG ...	MWN ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
291392	150	ATG ...	MVA ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, v6-5
310119	54	CTG ...	LEP ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF
316924	63	ATG ...	MTG ...	Ribo-seq	ATG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
21303	147	ATG ...	MDT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
20562	135	CTG ...	LLQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, v6-5
775142	129	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
773742	42	TTG ...	LTL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, v6-5
657251	48	CTG ...	LSQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, v6-5
653620	51	ATG ...	MCS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, v6-5
295298	39	ATG ...	MWG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
770139	36	TTG ...	LMW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, v6-5
320123	156	GTG ...	VGL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF
302647	96	ATG ...	MTG ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver, MEF, NSC, v6-5
774121	138	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
23892	111	TTG ...	LYS ...	Ribo-seq	TTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
652297	72	GTG ...	VRG ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, v6-5
309385	120	CTG ...	LAS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, v6-5
654411	126	CTG ...	LAG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF
313565	144	ATG ...	MDT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil
652471	129	CTG ...	LAH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, Liver, MEF
296319	39	ATG ...	MGT ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, Neutrophil, NSC, v6-5
320216	81	CTG ...	LRE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, v6-5
936475	51	ATT ...	ICL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
315250	135	CTG ...	LLQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, v6-5
18052	81	CTG ...	LRE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, v6-5
657498	69	ATG ...	MAA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF
936391	39	AAG ...	KKW ...	Ribo-seq	AAG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF
314167	183	GTG ...	VMV ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5

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