Transcript 16473 | MetamORF

Transcript

ID CARD

MetamORF ID

16473

ENSMUST00000028844

Name

Sppl2a-201

Strand

Biotype

protein_coding

Start-end positions

126890391-126933235

CDS Start-stop positions

126894212-126933012

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

NCBI:66552

Aliases

2010106G01Rik,
C130089K23Rik, ENSMUSG00000027366, MGI:1913802,
NCBI:66552, OFF:Sppl2a, Sppl2a

Chr 2

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
499365	30	TTG ...	LTI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
494055	42	GTG ...	VHL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
1167909	57	GTG ...	VGL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, v6-5
499883	183	GTG ...	VGW ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Liver, MEF, NSC, Spleen_B_cell
966726	54	AGG ...	RTT ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
971811	36	ATA ...	IFH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
965848	54	ATT ...	IFL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
965367	30	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
501607	150	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
494711	42	TTG ...	LYT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell, v6-5
16472	39	CTG ...	LLG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Skin_tumor, Spleen_B_cell
493944	51	TTG ...	LDF ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, Spleen_B_cell, v6-5
1461877	54	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, NSC
495824	72	CTG ...	LLS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
971334	33	ATT ...	ISS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
492625	36	CTG ...	LPC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
1645196	246	CTG ...	LCM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
500538	63	GTG ...	VRA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
501511	45	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, Spleen_B_cell
501577	66	ATG ...	MVR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
502433	96	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
982673	45	TTG ...	LSY ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF
1645483	240	ATG ...	MFI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
500934	84	TTG ...	LHI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell
95496	48	CTG ...	LYN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
99315	108	CTG ...	LLR ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC
1639839	66	TTG ...	LSY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
500244	42	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
16529	36	CTG ...	LGL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Skin_tumor, Spleen_B_cell
969482	51	ATT ...	IPH ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
95468	51	CTG ...	LLY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
502468	51	CTG ...	LYF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, Spleen_B_cell, v6-5
500870	144	CTG ...	LPC ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, Spleen_B_cell
1462182	63	ATG ...	MFR ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, NSC
502421	105	ATG ...	MCS ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC, Spleen_B_cell
500948	144	CTG ...	LFF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
968966	48	ACG ...	TLP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1460738	30	ATG ...	MWT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
964051	36	ATA ...	ITT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1637361	33	TTG ...	LYN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
500621	39	ATG ...	MRI ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
101043	87	ATG ...	MRL ...	Ribo-seq	ATG	weak	18	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
107563	42	CTG ...	LDT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF
492847	75	GTG ...	VGW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Liver, Spleen_B_cell
968921	39	CTG ...	LPG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
112654	48	TTG ...	LKK ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, NSC
121011	48	CTG ...	LFQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
102589	75	ATG ...	MAC ...	Ribo-seq	ATG	moderate	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
493396	42	ATG ...	MSR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC, Spleen_B_cell
500378	219	GTG ...	VPP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Liver, Spleen_B_cell
502025	63	CTG ...	LLC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, Spleen_B_cell, v6-5
500478	66	TTG ...	LLL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, Spleen_B_cell, v6-5
492986	36	CTG ...	LSQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
968097	45	ACG ...	TAL ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
103428	33	TTG ...	LHR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver
93447	54	CTG ...	LHS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, Spleen_B_cell, v6-5
1055119	60	TTG ...	LCG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, v6-5
106605	30	TTG ...	LLC ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
493750	45	CTG ...	LMS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, Spleen_B_cell
120129	90	CTG ...	LTV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
967709	111	GTG ...	VPP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
98533	54	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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