Transcript 418828

Transcript

ID CARD

MetamORF ID

418828

ENSMUST00000216313

Name

Sparc-209

Strand

Biotype

protein_coding

Start-end positions

55395421-55420325

CDS Start-stop positions

55395585-55420087

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:20692

Aliases

BM-40,
ENSMUSG00000018593, MGI:98373, NCBI:20692,
OFF:Sparc, ON, Sparc

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
419792	195	AGG ...	RTP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
419096	174	AGG ...	RLE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
7921	189	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
419722	54	ACG ...	TRE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
8298	87	GTG ...	VSW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
419589	54	ACG ...	TRE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
419399	93	AGG ...	RCV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
418827	54	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
8322	195	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
419860	240	AGG ...	RCV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
9099	99	ATG ...	MAR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
18876	81	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
9598	168	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
19477	81	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
419387	42	AGG ...	RAT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
418915	126	AGG ...	RAP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
419865	42	AGG ...	RAT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
419829	84	AGG ...	RAP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
9549	105	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
9551	246	ATG ...	MAR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
9433	234	GTG ...	VSW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
418859	48	AGG ...	RTP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
8438	147	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12

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